View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15126_low_15 (Length: 430)

Name: NF15126_low_15
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15126_low_15
NF15126_low_15
[»] chr7 (9 HSPs)
chr7 (1-364)||(28287646-28288005)
chr7 (1-98)||(28321270-28321367)
chr7 (1-85)||(28310696-28310780)
chr7 (1-74)||(28297208-28297281)
chr7 (254-310)||(43542440-43542496)
chr7 (1-94)||(28331749-28331842)
chr7 (254-310)||(33117877-33117933)
chr7 (254-310)||(27986229-27986284)
chr7 (249-301)||(32595209-32595261)
[»] chr2 (3 HSPs)
chr2 (248-303)||(18497212-18497267)
chr2 (257-310)||(28694387-28694440)
chr2 (254-303)||(38766288-38766337)
[»] chr8 (6 HSPs)
chr8 (254-304)||(373750-373800)
chr8 (257-310)||(5374616-5374669)
chr8 (250-310)||(37288371-37288431)
chr8 (257-310)||(40439758-40439811)
chr8 (257-309)||(23052267-23052319)
chr8 (249-303)||(34944143-34944197)
[»] chr1 (5 HSPs)
chr1 (257-310)||(12967283-12967336)
chr1 (249-302)||(33816370-33816423)
chr1 (249-302)||(33875840-33875893)
chr1 (249-304)||(2603108-2603163)
chr1 (249-301)||(21938051-21938103)
[»] chr3 (7 HSPs)
chr3 (249-309)||(118775-118835)
chr3 (257-307)||(52551092-52551142)
chr3 (254-303)||(1214775-1214825)
chr3 (249-310)||(11225837-11225898)
chr3 (249-310)||(11236093-11236154)
chr3 (263-304)||(25630149-25630190)
chr3 (258-310)||(46879408-46879460)
[»] chr4 (4 HSPs)
chr4 (249-304)||(31063634-31063689)
chr4 (257-309)||(27918229-27918281)
chr4 (255-310)||(19529675-19529730)
chr4 (257-309)||(42170691-42170743)
[»] chr5 (1 HSPs)
chr5 (257-310)||(15711034-15711087)
[»] chr6 (1 HSPs)
chr6 (265-310)||(32109584-32109629)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 28288005 - 28287646
Alignment:
Q  1 ggaagtggctttggccctggtggaagttttgtagaattttgagtttggtttaattttctaagaatgaggatgaggatgcttgcacttacaaaggaaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28288005 ggaagtggctttggccctggtggaagttttgtagaattttgagtttggtttaattttctaagaatgaggatgaggatgcttgcacttacaaaggaaatta 28287906  T
Q  101 gtatcaaaagcttttggtagtccatggcttctggctcttccacaccttaattttcagtgtgatataaagatatatatattaaagtggaccttataggtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  28287905 gtatcaaaagcttttggtagtccatggcttctggctcttccacaccttaattttctgtgtgatataaagatatatatagtaaagtggaccttataggtaa 28287806  T
Q  201 tagatttactctatgtgacactccttccatccaaaattatatgttttaatgacttattttacaaaaatatcttttattaatggcatggaaaacataaatt 300  Q
    |||||||||| || |||||||||||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  28287805 tagatttactgtacgtgacactccttccatccaaaat--tacgttttaatgagttattttacaaaaatatcttttattaatggcatggaaaatataaatt 28287708  T
Q  301 aaaataattgnnnnnnnnntaaagtaataactagtaaattgcatgatggaaaaataatcattaa 364  Q
    ||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  28287707 aaaataattg--aaaaaaataaagtaataactagtaaattgcatgatggaaaaataatcattaa 28287646  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28321270 - 28321367
Alignment:
Q  1 ggaagtggctttggccctggtggaagttttgtagaattttgagtttggtttaattttctaagaatgaggatgaggatgcttgcacttacaaaggaaat 98  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||| ||| |||||||||||||||||||    
T  28321270 ggaagtggctttggccctggtggaagtttagtagaattttgggtttggtttgattttctaagaatgaagatgagaatggttgcacttacaaaggaaat 28321367  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 28310696 - 28310780
Alignment:
Q  1 ggaagtggctttggccctggtggaagttttgtagaattttgagtttggtttaattttctaagaatgaggatgaggatgcttgcac 85  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| ||||| ||||    
T  28310696 ggaagtggttttggccctggtggaagttttgtagaattttgagtttggtttaattttttaaaaatgaagatgagaatgctcgcac 28310780  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28297208 - 28297281
Alignment:
Q  1 ggaagtggctttggccctggtggaagttttgtagaattttgagtttggtttaattttctaagaatgaggatgag 74  Q
    |||||||| | |||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||    
T  28297208 ggaagtgggtatggccctggtggaagtttagtagaattttgggtttggattaattttctaagaatgaagatgag 28297281  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 43542496 - 43542440
Alignment:
Q  254 ttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||||    
T  43542496 ttattttacaaaaatatcatttattaatagcatggaaaacgtaaattaaaagaattg 43542440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 28331749 - 28331842
Alignment:
Q  1 ggaagtggctttggccctggtggaagttttgtagaattttgagtttggtttaattttctaagaatgaggatgaggatgcttgcacttacaaagg 94  Q
    |||| ||| ||||||||||||||||| || || |||||||| ||||| || | |||||||| ||| | |||||| |||||||||||| ||||||    
T  28331749 ggaaatgggtttggccctggtggaagcttggtggaattttgggtttgtttaacttttctaataataaagatgagaatgcttgcacttgcaaagg 28331842  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 33117877 - 33117933
Alignment:
Q  254 ttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    |||||||||||||||||||||||||||||  ||||||||||| || ||||| |||||    
T  33117877 ttattttacaaaaatatcttttattaatgaaatggaaaacatgaactaaaagaattg 33117933  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 27986284 - 27986229
Alignment:
Q  254 ttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    |||||||| ||||| ||||||||||||||| ||| |||||||||||||||| |||||    
T  27986284 ttattttaaaaaaa-atcttttattaatggaatgaaaaacataaattaaaagaattg 27986229  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 32595209 - 32595261
Alignment:
Q  249 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaatta 301  Q
    |||| |||||||| ||||||||| ||||||||||| ||  |||||||||||||    
T  32595209 atgagttattttataaaaatatcctttattaatggtataaaaaacataaatta 32595261  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 18497267 - 18497212
Alignment:
Q  248 aatgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaa 303  Q
    ||||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  18497267 aatgagttattttacaaaaatatattttattaatggtttggaaaacataaattaaa 18497212  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 28694387 - 28694440
Alignment:
Q  257 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    ||||||||||||||  ||||||||||| ||| ||||||||||||||||||||||    
T  28694387 ttttacaaaaatattctttattaatggtatgaaaaacataaattaaaataattg 28694440  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 38766337 - 38766288
Alignment:
Q  254 ttattttacaaaaatatcttttattaatggcatggaaaacataaattaaa 303  Q
    ||||||||||||| |||| || ||||||||||||| ||| ||||||||||    
T  38766337 ttattttacaaaactatccttcattaatggcatgggaaaaataaattaaa 38766288  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 373750 - 373800
Alignment:
Q  254 ttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaa 304  Q
    |||||||||||||||||||||||||||| | |||||||| |||||||||||    
T  373750 ttattttacaaaaatatcttttattaattgtatggaaaatataaattaaaa 373800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 5374669 - 5374616
Alignment:
Q  257 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    ||||||||||||||| ||||||||||  |||||||||||||| |||||||||||    
T  5374669 ttttacaaaaatatcatttattaatgatatggaaaacataaaataaaataattg 5374616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 37288371 - 37288431
Alignment:
Q  250 tgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    |||||| |||||||||||||| |||||||||| | ||| |||| |||||||||||||||||    
T  37288371 tgacttgttttacaaaaatattttttattaattgtatgaaaaatataaattaaaataattg 37288431  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 40439758 - 40439811
Alignment:
Q  257 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    ||||||||||||||| || | |||||| |||||||||||||||||||| |||||    
T  40439758 ttttacaaaaatatccttcactaatggtatggaaaacataaattaaaagaattg 40439811  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 23052319 - 23052267
Alignment:
Q  257 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataatt 309  Q
    ||||||||| ||||| || |||||||| ||||||||||| |||||||||||||    
T  23052319 ttttacaaagatatccttcattaatggtatggaaaacattaattaaaataatt 23052267  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 303
Target Start/End: Complemental strand, 34944197 - 34944143
Alignment:
Q  249 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaa 303  Q
    |||| ||||||||| |||||||| || |||||||  |||||||||||||||||||    
T  34944197 atgagttattttactaaaatatccttcattaatgatatggaaaacataaattaaa 34944143  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 12967336 - 12967283
Alignment:
Q  257 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||    
T  12967336 ttttacaaaaatatcctttattaatggtatggaaaacataaataaaaagaattg 12967283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 33816423 - 33816370
Alignment:
Q  249 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaa 302  Q
    |||| ||||| ||| |||||||| || |||||||||||||||||||||||||||    
T  33816423 atgagttattatacgaaaatatcattcattaatggcatggaaaacataaattaa 33816370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 33875893 - 33875840
Alignment:
Q  249 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaa 302  Q
    |||| ||||| ||| |||||||| || |||||||||||||||||||||||||||    
T  33875893 atgagttattatacgaaaatatcattcattaatggcatggaaaacataaattaa 33875840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 2603163 - 2603108
Alignment:
Q  249 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaa 304  Q
    |||| |||||||||||||||||| || ||||| |  ||||||||||||||||||||    
T  2603163 atgagttattttacaaaaatatcattcattaacgatatggaaaacataaattaaaa 2603108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 21938103 - 21938051
Alignment:
Q  249 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaatta 301  Q
    |||| ||||||||||||||||||||| |||| ||| |||  ||||||||||||    
T  21938103 atgaattattttacaaaaatatctttcattagtggtatgataaacataaatta 21938051  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 118835 - 118775
Alignment:
Q  249 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataatt 309  Q
    |||| |||||||||||||||||| || |||||||| |||| ||||||||||||||| ||||    
T  118835 atgagttattttacaaaaatatcattaattaatggtatggtaaacataaattaaaagaatt 118775  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 52551092 - 52551142
Alignment:
Q  257 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataa 307  Q
    |||| |||||||||| ||||||||||| ||| |||||||||||||||||||    
T  52551092 ttttgcaaaaatatcatttattaatggtatgaaaaacataaattaaaataa 52551142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 1214775 - 1214825
Alignment:
Q  254 ttattttacaaaaa-tatcttttattaatggcatggaaaacataaattaaa 303  Q
    |||||||||||||| |||| ||||||| ||| |||||||||||||||||||    
T  1214775 ttattttacaaaaaatatcctttattattggtatggaaaacataaattaaa 1214825  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 11225898 - 11225837
Alignment:
Q  249 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    |||| ||||||||||||||||||||| ||||||   |||||||| ||| ||||||| |||||    
T  11225898 atgaattattttacaaaaatatctttcattaatcatatggaaaaaatacattaaaagaattg 11225837  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 11236154 - 11236093
Alignment:
Q  249 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    |||| ||||||||| |||| |||||||||||||   |||||||| ||||||||||| |||||    
T  11236154 atgagttattttactaaaacatcttttattaattatatggaaaatataaattaaaagaattg 11236093  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 25630190 - 25630149
Alignment:
Q  263 aaaaatatcttttattaatggcatggaaaacataaattaaaa 304  Q
    ||||||||| ||||||||||| || |||||||||||||||||    
T  25630190 aaaaatatcctttattaatggtatcgaaaacataaattaaaa 25630149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 46879408 - 46879460
Alignment:
Q  258 tttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    |||| ||||||||| |||||||||   |||||||||||||||||||| |||||    
T  46879408 tttataaaaatatcatttattaataatatggaaaacataaattaaaagaattg 46879460  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 31063689 - 31063634
Alignment:
Q  249 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaa 304  Q
    |||| |||||||||||||||||| || | |||||| ||||||||||||||||||||    
T  31063689 atgagttattttacaaaaatatccttcactaatggtatggaaaacataaattaaaa 31063634  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 27918229 - 27918281
Alignment:
Q  257 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataatt 309  Q
    ||||||| ||||||| ||||||||| | |||||||||||||||||||| ||||    
T  27918229 ttttacataaatatcatttattaatagtatggaaaacataaattaaaagaatt 27918281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 19529675 - 19529730
Alignment:
Q  255 tattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    ||||||||||||||||  ||||||||||| ||||||||| ||||| |||| |||||    
T  19529675 tattttacaaaaatattctttattaatggtatggaaaacctaaataaaaagaattg 19529730  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 42170743 - 42170691
Alignment:
Q  257 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataatt 309  Q
    ||||||||||||||| ||  |||||||  ||||||||||||||||||| ||||    
T  42170743 ttttacaaaaatatcattcgttaatggtgtggaaaacataaattaaaagaatt 42170691  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 15711034 - 15711087
Alignment:
Q  257 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    ||||| ||||||||| || |||||||| |||||||||||||||||||| |||||    
T  15711034 ttttataaaaatatcattcattaatggtatggaaaacataaattaaaagaattg 15711087  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 32109584 - 32109629
Alignment:
Q  265 aaatatcttttattaatggcatggaaaacataaattaaaataattg 310  Q
    ||||||| || |||||||| |||||||||||||||||||| |||||    
T  32109584 aaatatcattcattaatggtatggaaaacataaattaaaagaattg 32109629  T

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