View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15126_low_16 (Length: 423)

Name: NF15126_low_16
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15126_low_16
NF15126_low_16
[»] chr7 (2 HSPs)
chr7 (16-415)||(41265533-41265921)
chr7 (49-89)||(1120030-1120070)
[»] chr3 (2 HSPs)
chr3 (47-96)||(50676893-50676942)
chr3 (49-85)||(5117230-5117266)
[»] chr1 (1 HSPs)
chr1 (51-96)||(23979408-23979453)
[»] chr2 (2 HSPs)
chr2 (50-90)||(12126892-12126932)
chr2 (49-85)||(43826445-43826481)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 41265533 - 41265921
Alignment:
Q  16 cattgatcaccgatacacaagattaaattgcagggacaatacataatatatgtatggtttgatgttcgaaccccgaacaccnnnnnnnntatttcaaaga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          ||||| ||||||||||||||        |||||||||||    
T  41265533 cattgatcaccgatacacaagattaaattgcagggacaatacataatatat----------atgtttgaaccccgaacaccaaaaaatatatttcaaaga 41265622  T
Q  116 ggttggaaccttttactatacagacaagagttgtgttcaaaattatgtcctagctcaaacttctttaatctgttcattttttgttgtttatccaaattct 215  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41265623 ggttggaaccttttactatgcagacaagagttgtgttcaaaattatgtcctagctcaaacttctttaatctgttcatttttt-ttgtttatccaaattct 41265721  T
Q  216 ctgataatcatcctcagatctaattatttgcatatttgagtttataaaatgcggggtgattatgaactctttctatatttcttcttccaaaagatattag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41265722 ctgataatcatcctcagatctaattatttgcatatttgagtttataaaatgcggggtgattatgaactctttctatatttcttcttccaaaagatattag 41265821  T
Q  316 tctcttttattgtttataagccacattgatcaaacgatataaatatttgtatctttttattttatcatctccaattttgtgtggtctgtttgttcatctc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41265822 tctcttttattgtttataagccacattgatcaaacgatataaatatttgtatctttttattttatcatctccaattttgtgtggtctgtttgttcctctc 41265921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 1120070 - 1120030
Alignment:
Q  49 ggacaatacataatatatgtatggtttgatgttcgaacccc 89  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  1120070 ggacaatacataatatatgtaaagtttggtgttcgaacccc 1120030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 50676942 - 50676893
Alignment:
Q  47 agggacaatacataatatatgtatggtttgatgttcgaaccccgaacacc 96  Q
    |||||||||||||| |||||||| || |||  ||||||||||||||||||    
T  50676942 agggacaatacatattatatgtaggggttggggttcgaaccccgaacacc 50676893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 5117230 - 5117266
Alignment:
Q  49 ggacaatacataatatatgtatggtttgatgttcgaa 85  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  5117230 ggacaatacataatatatgtaaggtttgaggttcgaa 5117266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 23979453 - 23979408
Alignment:
Q  51 acaatacataatatatgtatggtttgatgttcgaaccccgaacacc 96  Q
    ||||||||||||||||||||||||||  |||| |||||||| ||||    
T  23979453 acaatacataatatatgtatggtttggggttcaaaccccgaccacc 23979408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 12126892 - 12126932
Alignment:
Q  50 gacaatacataatatatgtatggtttgatgttcgaaccccg 90  Q
    |||||||||||||||||||| ||||||| |||| |||||||    
T  12126892 gacaatacataatatatgtaaggtttgaggttcaaaccccg 12126932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 43826481 - 43826445
Alignment:
Q  49 ggacaatacataatatatgtatggtttgatgttcgaa 85  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  43826481 ggacaatacataatatatgtaaggtatgatgttcgaa 43826445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University