View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_18 (Length: 419)
Name: NF15126_low_18
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Original strand, 9299561 - 9299951
Alignment:
| Q |
13 |
cagaactaaaagcacaactggagcagatgactactaaagccaatgaagctgaagctggaattaagttggtgattaacagcttcgtgttagaaaaaatgaa |
112 |
Q |
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| T |
9299561 |
cagaactaaaagcacaactgaagcagatgactactaaagccaatgaagctgaagctggaattaagttggtgattaacagcttcgtgttagaaaaaatgaa |
9299660 |
T |
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| Q |
113 |
ggatgctgaccggattaatgaggtataatacattctctatgtgaatttgcaatgattatgagtcttgttaaagatgaacttttcaatcagcatttaaagg |
212 |
Q |
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| T |
9299661 |
ggatgctgaccggattaatgaggtataatacattctctatgtgaatttgcaatgattatgagtcttgttaaagatgaacttttcaatcagcatttaaagg |
9299760 |
T |
|
| Q |
213 |
agaagaaaagtataaatgaatttgcaatgatcatagcaatgagttttgtcaaagatagttgtttgtaatgtagaaggttccatatttagcttgtgcatga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
9299761 |
agaagaaaagtataaatgaatttgcaatgatcatagcaatgagtcttgtcaaagatagttgtttgtcatgtagaaggttccatatttaacttgtgcatga |
9299860 |
T |
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| Q |
313 |
cacctataaacttagagaaatactaatttcaactgatgcctccaagacactagttaaggaatcaaatataacatgtattggacgttgtgtg |
403 |
Q |
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| T |
9299861 |
cacctataaacttagagaaatactaatttcaactgatgcctccaagacactggttaaggaatcaaatataacatgtattggaagttgtgtg |
9299951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 9301768 - 9301835
Alignment:
| Q |
13 |
cagaactaaaagcacaactggagcagatgactactaaagccaatgaagctgaagctggaattaagttg |
80 |
Q |
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| T |
9301768 |
cagaactaaaagcacaactggagcagatgactgctaaagccaatgaagctgaaattggaaataagttg |
9301835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 43187861 - 43187725
Alignment:
| Q |
13 |
cagaactaaaagcacaactggagcagatgactactaaagccaatgaagctgaagctggaattaagttggtgattaacagcttcgtgttagaaaaaatgaa |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||| || ||||| || |||| |||||||||| ||||| |
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| T |
43187861 |
cagaactgaaagcacaactggagcagatgactactaaagctaatgaagctgaagctgaaaataagatgttgattgaccgcttgatgttagaaaagatgaa |
43187762 |
T |
|
| Q |
113 |
ggatgctgaccggattaatgaggtataatacattctc |
149 |
Q |
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||||||||| || | |||||||||||||||| |||| |
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| T |
43187761 |
ggatgctgaacgcctaaatgaggtataatacaatctc |
43187725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 1116390 - 1116498
Alignment:
| Q |
13 |
cagaactaaaagcacaactggagcagatgactactaaagccaatgaagctgaagctggaattaagttggtgattaacagcttcgtgttagaaaaaatgaa |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| || ||| || |||| |||||||||| ||||| |
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| T |
1116390 |
cagaactaaaagcacaactagagcagatgactactaaagccaatgaagctgaagctgaaaataagatgttgaccgaccgcttgatgttagaaaagatgaa |
1116489 |
T |
|
| Q |
113 |
ggatgctga |
121 |
Q |
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||||||||| |
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| T |
1116490 |
ggatgctga |
1116498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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