View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_19 (Length: 399)
Name: NF15126_low_19
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 2838807 - 2839178
Alignment:
| Q |
1 |
aatcttcatctgtgactaaaatcaacatcacattgcatagaataacttttaaagtaagtgcagacctaaaaagtcaattcaaacaaattctgaaaagttt |
100 |
Q |
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|||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2838807 |
aatcttcatctgcggctaaaatcgacatcacattgcatacaataacttttaaagtaagtgcagacctaaaaagtcaattcaaacaaattctgaaaagttt |
2838906 |
T |
|
| Q |
101 |
gttatgagtccatttgttgtttcaataacctacagcaagaaaacagaattcaagttaaaattttgtctccatgagaactatatatcaatcaatagaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2838907 |
gttatgagtccatttgttgtttcaataacctacagcaagaaaacagaattcaagttaaaattttgtctccatgagaactatatatcaatcaatagaaacg |
2839006 |
T |
|
| Q |
201 |
tatgaacgaaaaacctcagagtcctccatgcaagccatgattcattcagaagactctccggggtccaaaagaaaagtatnnnnnnnnacacaaaggtgac |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
2839007 |
tatgaacgaaaaacctcacagtcctccatgcaagccatgattcattcagaagactctccggggtccaaaagaaaagta-cgggggggacacaaaagtgac |
2839105 |
T |
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| Q |
301 |
attttttcatacaagagccaatgcagttgatgtggaaggtatgaacacaaatattaaacattcaaagcatggt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2839106 |
attttttcatacaagagccaatgcagttgatgtggaaggtatgaacacaaacattaaacattcaaagcatggt |
2839178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 2374545 - 2374306
Alignment:
| Q |
1 |
aatcttcatctgtgactaaaatcaacatcacattgcatagaataacttttaaagtaagtgcagacctaaaaagtcaattcaaacaaattctgaaaagttt |
100 |
Q |
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|||||||||||| || ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2374545 |
aatcttcatctgcgagtaaaatccacatcatattgcatagaataacttttcaagtaagtgcagacctaaaaagtcaattcaaagaaattctgaaaagttt |
2374446 |
T |
|
| Q |
101 |
gttatgagtccat----ttgttgtttcaataacctacagcaagaaaacagaattcaagttaaaattttgtctccatgagaactatatatcaatcaataga |
196 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2374445 |
gttatgagtccatccatttgttgtttcaataacctacagcatgaaaacagaattcaagttaaaattttgcctccatgagaactatatatcaatcaataga |
2374346 |
T |
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| Q |
197 |
aatgtatgaacgaaaaacctcagagtcctccatgcaagcc |
236 |
Q |
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| T |
2374345 |
aatgtatgaaggaaaaacctcagagtcctccatgcaagcc |
2374306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2381526 - 2381765
Alignment:
| Q |
1 |
aatcttcatctgtgactaaaatcaacatcacattgcatagaataacttttaaagtaagtgcagacctaaaaagtcaattcaaacaaattctgaaaagttt |
100 |
Q |
| |
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|||||||||||| || ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2381526 |
aatcttcatctgcgagtaaaatccacatcatattgcatagaataacttttcaagtaagtgcagacctaaaaagtcaattcaaagaaattctgaaaagttt |
2381625 |
T |
|
| Q |
101 |
gttatgagtcca----tttgttgtttcaataacctacagcaagaaaacagaattcaagttaaaattttgtctccatgagaactatatatcaatcaataga |
196 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2381626 |
gttatgagtccatccatttgttgtttcaataacctacagcatgaaaacagaattcaagttaaaattttgcctccatgagaactatatatcaatcaataga |
2381725 |
T |
|
| Q |
197 |
aatgtatgaacgaaaaacctcagagtcctccatgcaagcc |
236 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| |
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| T |
2381726 |
aatgtatgaaggaaaaacctcagagtcctccatgcaagcc |
2381765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 2374231 - 2374160
Alignment:
| Q |
302 |
ttttttcatacaagagccaatgcagttgatgtggaaggtatgaacacaaatattaaacattcaaagcatggt |
373 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||| |
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| T |
2374231 |
ttttttcatataagagccaatgcagttgatgtggaaggtattaacactaacattaaacatccaaagcatggt |
2374160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 373
Target Start/End: Original strand, 2381840 - 2381911
Alignment:
| Q |
302 |
ttttttcatacaagagccaatgcagttgatgtggaaggtatgaacacaaatattaaacattcaaagcatggt |
373 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||| |
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| T |
2381840 |
ttttttcatataagagccaatgcagttgatgtggaaggtattaacactaacattaaacatccaaagcatggt |
2381911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1376121 - 1376203
Alignment:
| Q |
1 |
aatcttcatctgtgactaaaatcaacatcacattgcatagaataacttttaaagtaagtgcagacctaaaaagtcaattcaaa |
83 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||| |||| |||||||||||||| |
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| T |
1376121 |
aatcttcatctgcaactaaaatccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaa |
1376203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1525351 - 1525584
Alignment:
| Q |
1 |
aatcttcatctgtgactaaaatcaacatcacattgcatagaataacttttaaagtaagtgcagacctaaaaagtcaattcaaacaaattctg-aaaagtt |
99 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1525351 |
aatcttcatctgtgactaaaatccacatcacattgcatagaataacttttcaagtaagtgcagacctaaaaagtcaattcaaacaaattctgaaaaagtt |
1525450 |
T |
|
| Q |
100 |
tgttatgagtccatttgttgtttcaataacctacagcaagaaaacagaat-------------tcaagttaaaattttgtctccatgagaactatatatc |
186 |
Q |
| |
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| ||||||||||||||||||||||| |||||||||||| | ||||||||| |||||||||| || ||||||||||||||||||||||| |
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| T |
1525451 |
tcttatgagtccatttgttgtttcagtaacctacagcatggaaacagaatatggaaacagaactcaagttaaagttgtgtctccatgagaactatatatc |
1525550 |
T |
|
| Q |
187 |
aatcaatagaaatgtatgaacgaaaaacctcaga |
220 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
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| T |
1525551 |
aatcaatagaaatgtatgaaggaaaaacctcaga |
1525584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 1523024 - 1523133
Alignment:
| Q |
111 |
catttgttgtttcaataacctacagcaagaaaacagaattcaagttaaaattttgtctccatgagaactatatatcaatcaatagaaatgtatgaacgaa |
210 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1523024 |
catttgttgtttcagtaacctacagcatgaaaacagaattcaagttaaagtttggtctccatgagaactatatatcaatcaatagaaatgtatgaaggaa |
1523123 |
T |
|
| Q |
211 |
aaacctcaga |
220 |
Q |
| |
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|||||||||| |
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|
| T |
1523124 |
aaacctcaga |
1523133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 373
Target Start/End: Original strand, 1525616 - 1525688
Alignment:
| Q |
301 |
attttttcatacaagagccaatgcagttgatgtggaaggtatgaacacaaatattaaacattcaaagcatggt |
373 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
1525616 |
attttttcatataagaaccaatgcagttgatgtggaaggtatgaacactaacattaaacattcaaagcatggt |
1525688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 1525584 - 1525612
Alignment:
| Q |
237 |
atgattcattcagaagactctccggggtc |
265 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
1525584 |
atgattcattcagaagactctccggggtc |
1525612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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