View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_23 (Length: 352)
Name: NF15126_low_23
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 32058772 - 32059106
Alignment:
| Q |
16 |
gcaactagaataataaaatcgtaagatagttttcttatgggaacattaaaagggattactagttactactcaaactacaatat--accttgcatatttat |
113 |
Q |
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| T |
32058772 |
gcaactagaataataaaatggtaagatagttttcttatgggaacattaaaagggattactagttactactcaaactacaatatataccttgcatatttat |
32058871 |
T |
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| Q |
114 |
gtaatcatctattagttttttaacggttcttaatattgaaatcattgaaatttctcttcctctagagattggtaaaaacaatatcacacgcttactcaca |
213 |
Q |
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| T |
32058872 |
gtaatcatctattagttttttaacggttcttaatattgaaatcattgaaatttctcttcctctagagattggtaaaaacaatatcacacgcttactcaca |
32058971 |
T |
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| Q |
214 |
aacagagaaattgcaatgttcaaacaaattaatatatagaaggattgagaacacaaaaaagttatagaatgcttttatatgcactccaattgcataaagt |
313 |
Q |
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| T |
32058972 |
aacagagaaattgcaatgttcaaacaaattaatatatagaaggattgagaacacaaaaaagttatagaatgcttttatatgcactccaattgcataaagt |
32059071 |
T |
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| Q |
314 |
cgccagccctgtgcaagtgcaacaatgtcctttgc |
348 |
Q |
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| T |
32059072 |
tgccagccctgtgcaagtgcaacaatgtcctttgc |
32059106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 30729603 - 30729718
Alignment:
| Q |
76 |
agttactactcaaactacaatataccttgcatatttatgtaatcatctattagttttttaacggttcttaatattgaaatcattgaaatttctcttcctc |
175 |
Q |
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| T |
30729603 |
agttactactcaaactacaacataccttgtatatttatgtaatcatatagtagtttcataacggttcttaatattgaaatcattgaaatttatcttcatc |
30729702 |
T |
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| Q |
176 |
tagagattggtaaaaa |
191 |
Q |
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| T |
30729703 |
taaagtttggaaaaaa |
30729718 |
T |
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