View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15126_low_24 (Length: 346)

Name: NF15126_low_24
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15126_low_24
NF15126_low_24
[»] chr3 (3 HSPs)
chr3 (92-297)||(20605945-20606150)
chr3 (23-235)||(20593126-20593351)
chr3 (233-297)||(20590916-20590980)
[»] chr6 (2 HSPs)
chr6 (14-297)||(5155248-5155530)
chr6 (105-269)||(17537657-17537821)
[»] chr2 (3 HSPs)
chr2 (177-297)||(24509713-24509834)
chr2 (177-269)||(32152777-32152870)
chr2 (198-296)||(23739782-23739880)
[»] chr7 (2 HSPs)
chr7 (177-269)||(24176405-24176498)
chr7 (176-209)||(730150-730183)
[»] chr4 (4 HSPs)
chr4 (176-209)||(31229948-31229981)
chr4 (176-209)||(31234757-31234790)
chr4 (176-209)||(31234881-31234914)
chr4 (47-81)||(31234615-31234649)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 92 - 297
Target Start/End: Complemental strand, 20606150 - 20605945
Alignment:
Q  92 aagattgacaccaccatggaaatcaccatggataaagcttgaagctctagaaaaagaagagagagaatgtattaattaattgatgaaaacggttacaaga 191  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  20606150 aagattgaaaccgccatggaaatcaccatggataaagcttgaagctctagaaaaagaagagaaagaatgtattgattaattgatgaaaacggttacaaga 20606051  T
Q  192 gtagcttatatagaagctgagatctctaactaactatatgcaatacaaatgaaatgtaaatgtaagggaaattacaaaggcactaagataacttgcgcgc 291  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  20606050 gtagcttatatagaagctgagatctgtaactaactacatgcaatacaaatgaaatgtaaatgtaagtgaaattacaaatgcactaagataacttgcgcgc 20605951  T
Q  292 taagta 297  Q
    ||||||    
T  20605950 taagta 20605945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 20593351 - 20593126
Alignment:
Q  23 atagaagaggaagacgaacaaaagaacgttctatcttcattgtgcggaagcagagcaag-------------tgaaccatctaagattgacaccaccatg 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||             |  ||||||||||||||||| |||||||    
T  20593351 atagaagaggaagacgaacaaaacaacgttctatcttcattgtgcggaagcagagcaagattcacttgctcttataccatctaagattgacatcaccatg 20593252  T
Q  110 gaaatcaccatggataaagcttgaagctctagaaaaagaagagagagaatgtattaattaattgatgaaaacggttacaagagtagcttatatagaagct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  20593251 gaaatcaccatggataaagcttgaagctctagaaaaagaagagagagaatgtattgattaattgatgaaaacagttacaagagtagcttatatagaagct 20593152  T
Q  210 gagatctctaactaactatatgcaat 235  Q
      |||||||||||||||| |||||||    
T  20593151 ctgatctctaactaactacatgcaat 20593126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 20590980 - 20590916
Alignment:
Q  233 aatacaaatgaaatgtaaatgtaagggaaattacaaaggcactaagataacttgcgcgctaagta 297  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20590980 aatacaaatgaaatgtaaatgtaagtgaaattacaaaggcactaagataacttgcgcgctaagta 20590916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 5155248 - 5155530
Alignment:
Q  14 agaagaggaatagaagaggaagacgaacaaaagaacgttctatcttcattgtgcggaagcagagcaag------------tga-accatctaagattgac 100  Q
    |||||| ||||||||| |||||| |||||||| ||| || ||||||||||||||||||||||||||||            ||| |||||||||||||||     
T  5155248 agaagaagaatagaaggggaagatgaacaaaacaacattttatcttcattgtgcggaagcagagcaagatgcgcttgctctgataccatctaagattgaa 5155347  T
Q  101 accaccatggaaatcaccatggataaagcttgaagctctagaaaaagaagagagagaatgtattaattaattgatgaaaacggttacaagagtagcttat 200  Q
    ||| ||||||||| |||||||||||||||||||||||||||||||             |||||| || ||||||||||||||||||||||||||||||||    
T  5155348 accgccatggaaaccaccatggataaagcttgaagctctagaaaa-------------tgtattgat-aattgatgaaaacggttacaagagtagcttat 5155433  T
Q  201 atagaagctgagatctctaactaactatatgcaatacaaatgaaatgtaaatgtaagggaaattacaaaggcactaagataacttgcgcgctaagta 297  Q
    ||||||||| ||  ||||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||| |||| |||||||||||| |||||||||    
T  5155434 atagaagctaagtcctctaactaactacatgcaatacaaatgaaatgtatatgaaagtgaaattacaaatgcaccaagataacttgcacgctaagta 5155530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 105 - 269
Target Start/End: Original strand, 17537657 - 17537821
Alignment:
Q  105 ccatggaaatcaccatggataaagcttgaagctctagaaaaagaagagagagaa-tgtattaattaattgatgaaaacggttacaagagtagcttatata 203  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||  ||||||||||||||||||| ||||||||    
T  17537657 ccatggaaatcaccatggataaagcttgaagctctagaaaa-gaggagagagaaatgtattgattaattgtggaaaacggttacaagagtatcttatata 17537755  T
Q  204 gaagctgagatctctaactaactatatgcaatacaaatgaaatgtaaatgtaagggaaattacaaa 269  Q
     ||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||  |||||||||||    
T  17537756 taagctaagatctctaactaactagatgcactacaaatgaaatgtaaatgaaactgaaattacaaa 17537821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 24509834 - 24509713
Alignment:
Q  177 aaaacggttacaagagtagct-tatatagaagctgagatctctaactaactatatgcaatacaaatgaaatgtaaatgtaagggaaattacaaaggcact 275  Q
    |||| ||||||| || ||||| |||||||||||||| |  |||||||||||| |||||| | |||||||||||||||| ||| ||||||||||| || ||    
T  24509834 aaaatggttacaggaatagctatatatagaagctgaaacttctaactaactacatgcaacataaatgaaatgtaaatgaaagtgaaattacaaaagctct 24509735  T
Q  276 aagataacttgcgcgctaagta 297  Q
    ||   |||||||||||||||||    
T  24509734 aatgaaacttgcgcgctaagta 24509713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 32152777 - 32152870
Alignment:
Q  177 aaaacggttacaagagtagct-tatatagaagctgagatctctaactaactatatgcaatacaaatgaaatgtaaatgtaagggaaattacaaa 269  Q
    ||||||||||||  | ||||| |||||||||||||| |  |||||||||||| |||||| | |||||||||||||||| ||| |||||||||||    
T  32152777 aaaacggttacagtaatagctatatatagaagctgaaacttctaactaactacatgcaacataaatgaaatgtaaatgaaagtgaaattacaaa 32152870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 23739880 - 23739782
Alignment:
Q  198 tatatagaagctgagatctctaactaactatatgcaatacaaatgaaatgtaaatgtaagggaaattacaaaggcactaagataacttgcgcgctaagt 296  Q
    |||||||||||||| |  |||||||||||| |||||| | |||||||||||||||  ||| ||||||||||| || | ||   ||||||||||||||||    
T  23739880 tatatagaagctgaaacttctaactaactacatgcaacataaatgaaatgtaaatcaaagtgaaattacaaaagctcgaatgaaacttgcgcgctaagt 23739782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 24176405 - 24176498
Alignment:
Q  177 aaaacggttacaagagtagct-tatatagaagctgagatctctaactaactatatgcaatacaaatgaaatgtaaatgtaagggaaattacaaa 269  Q
    |||||||||||| || ||||| |||||||||||||| |  |||||||||||| |||||| | |||||||||||||||| ||| |||||||||||    
T  24176405 aaaacggttacaggaatagctatatatagaagctgaaacttctaactaactacatgcaacataaatgaaatgtaaatgaaagtgaaattacaaa 24176498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 730150 - 730183
Alignment:
Q  176 gaaaacggttacaagagtagcttatatagaagct 209  Q
    ||||||||||||| ||||||||||||||||||||    
T  730150 gaaaacggttacaggagtagcttatatagaagct 730183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 31229948 - 31229981
Alignment:
Q  176 gaaaacggttacaagagtagcttatatagaagct 209  Q
    ||||||||||||||||||||||||||||||||||    
T  31229948 gaaaacggttacaagagtagcttatatagaagct 31229981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 31234757 - 31234790
Alignment:
Q  176 gaaaacggttacaagagtagcttatatagaagct 209  Q
    ||||||||||||||||||||||||||||||||||    
T  31234757 gaaaacggttacaagagtagcttatatagaagct 31234790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 31234881 - 31234914
Alignment:
Q  176 gaaaacggttacaagagtagcttatatagaagct 209  Q
    ||||||||||||||||||||||||||||||||||    
T  31234881 gaaaacggttacaagagtagcttatatagaagct 31234914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 31234615 - 31234649
Alignment:
Q  47 aacgttctatcttcattgtgcggaagcagagcaag 81  Q
    ||||||| |||||||||||||||||||||||||||    
T  31234615 aacgttcaatcttcattgtgcggaagcagagcaag 31234649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University