View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_29 (Length: 328)
Name: NF15126_low_29
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 50637056 - 50636743
Alignment:
| Q |
1 |
agttcttgttagggttttacgctagttgccagacggttccatttcttcccgctcgctaacaataaccaatgccatatcagaaaacctaacaatcttccac |
100 |
Q |
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| T |
50637056 |
agttcttgttagggttttacgcttgttgccagacggttccatttcttcccgctcgctcacaataaccaatgccatatcagaaaacctaacaatcttccac |
50636957 |
T |
|
| Q |
101 |
aaacttcccaactctcattccaccaattctcactttcgtaaccgtttcgctgtctgaatttcattttcagactaagaatctgtcgaaccattcaactatg |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
50636956 |
aaacttcccaactctcattccatcaattctcactttcgtaaccgtttcgctttctgaatttcattttcagacgaagaatctgtcgaaccatccaactatg |
50636857 |
T |
|
| Q |
201 |
gtagaagatgcaaatgacaaggatcctgaattcaaatggggaaaacataaatgcgtcggtggcnnnnnnngggaagttaatttctacgaatcgtttactt |
300 |
Q |
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| T |
50636856 |
gtagaagatgcaaatgacaaggatcctgaattcaaatggggaaaacataaatgcttcggtggcaaaaaaagggaagttaatttctacgaatcgtttactt |
50636757 |
T |
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| Q |
301 |
acgatggtgttcat |
314 |
Q |
| |
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|||||||||||||| |
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| T |
50636756 |
acgatggtgttcat |
50636743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 92 - 254
Target Start/End: Complemental strand, 21370308 - 21370146
Alignment:
| Q |
92 |
atcttccacaaacttcccaactctcattccaccaattctcactttcgtaaccgtttcgctgtctgaatttcattttcagactaagaatctgtcgaaccat |
191 |
Q |
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|||||||||||||||| |||||||||||||| ||||| ||| ||||||||| ||||| | |||||||||||||||||||| ||||||||||| |||||| |
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| T |
21370308 |
atcttccacaaacttctcaactctcattccatcaattttcaatttcgtaactgtttcaccgtctgaatttcattttcagatgaagaatctgtcaaaccat |
21370209 |
T |
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| Q |
192 |
tcaactatggtagaagatgcaaatgacaaggatcctgaattcaaatggggaaaacataaatgc |
254 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||| |||| ||||||| |
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| T |
21370208 |
ccaactatggtagaagatgcaaacgagaaggatcctgaattcaaatggggcaaacgtaaatgc |
21370146 |
T |
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