View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_3 (Length: 742)
Name: NF15126_low_3
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_3 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 673; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 15 - 724
Target Start/End: Original strand, 38637983 - 38638692
Alignment:
| Q |
15 |
caaaggtagacatgatatgaaagaactagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38637983 |
caaaggtagacatgatatgaaagaactagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagca |
38638082 |
T |
|
| Q |
115 |
tatcaaaggattttgaaattgaaaaaattgcatcacgaggaggtaatgtttttaaaaccataatctatgaatttgatataattgcacttactagtgtcat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38638083 |
tatcaaaggattttgaaattgaaaaaattgcatcacgaggaggtaatgtttttaaaaccataatctatgaatttgatataattgcaattactagtgtcat |
38638182 |
T |
|
| Q |
215 |
ttgttttgacaaattgacatcgatcaagtcattgtctcagatgttccaacgataaaggtcatgaacttatacttcagaagactgatattagattattcgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638183 |
ttgttttgacaaattgacatcgatcaagtcattgtctcagatgttccaacgataaaggtcatgaacttatacttcagaagactgatattagattattcgt |
38638282 |
T |
|
| Q |
315 |
tatcttagagtttgagacgatgagnnnnnnnaagtactcgtattatgattgaatgaaatagtgaattcaatgattgaatattgaatgtacaattgctatt |
414 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638283 |
tatcttagagtttgagacgatgagtttttttaagtactcgtattatgattgaatgaaatagtgaattcaatgattgaatattgaatgtacaattgctatt |
38638382 |
T |
|
| Q |
415 |
tatatacaaatgagactctatgctagcttattgtgtaagtaaccacacatgattactaaattaaactgactaactagataacttgtggcctaagtaatct |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638383 |
tatatacaaatgagactctatgctagcttattgtgtaagtaaccacacaggattactaaattaaactgactaactagataacttgtggcctaagtaatct |
38638482 |
T |
|
| Q |
515 |
agttttcacttatttgttcactatcatcttcatgatgcaataactcgtcaattagggagccccaaacatgtagaacttgccacatcttatgtgttaaatt |
614 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638483 |
agttttcacttatctgttcactatcatcttcatgatgcaataactcgtcaattagggagccccaaacatgtagaacttgccacatcttatgtgttaaatt |
38638582 |
T |
|
| Q |
615 |
ttaaatttcagattctcccgtatgatcagcattgttcgctaataaataaagtgcatcagttggctaaagaaaaagatgtagcagcccttgataagatgtc |
714 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38638583 |
ttaaatttcagattctcccgtatgatcagcattgttcgctaataaataaagtgcatcagttggctaaagaaaaagatatagcagcccttgataagatgtc |
38638682 |
T |
|
| Q |
715 |
acgttcagag |
724 |
Q |
| |
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|||||||||| |
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| T |
38638683 |
acgttcagag |
38638692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 38633944 - 38634082
Alignment:
| Q |
22 |
agacatgatatgaaagaactagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaa |
121 |
Q |
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||||||| | |||||||||||||||| ||||| |||||||||||||||||| || |||||| |||||||| ||||||||||||| |||||||||||||| |
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| T |
38633944 |
agacatggtgtgaaagaactagaagccataaatggagaattatattctttgaaagcaaaattaacagagaatcataagaaaaagggtgaagcatatcaaa |
38634043 |
T |
|
| Q |
122 |
ggattttgaaattgaaaaaattgcatcacgaggaggtaa |
160 |
Q |
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||||||| ||||||||||| |||||||| |||||||||| |
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| T |
38634044 |
ggattttaaaattgaaaaacttgcatcatgaggaggtaa |
38634082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 38690649 - 38690730
Alignment:
| Q |
59 |
aattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttgaaattgaaaaa |
140 |
Q |
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|||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
38690649 |
aattatattctttgagtgcaaaattgatagagaagcataagaataaggatgaagcatatcaaaggattttcaaattgaaaaa |
38690730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 619 - 724
Target Start/End: Original strand, 38634333 - 38634438
Alignment:
| Q |
619 |
atttcagattctcccgtatgatcagcattgttcgctaataaataaagtgcatcagttggctaaagaaaaagatgtagcagcccttgataagatgtcacgt |
718 |
Q |
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|||||||||||||| ||| | ||||||||||| || ||||||||||| |||||| |||| |||||||||||||| || |||| ||| |||||||| | |
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| T |
38634333 |
atttcagattctccactattaccagcattgttcacttataaataaagtccatcagctggcagaagaaaaagatgtatcaaccctagatgagatgtcaaat |
38634432 |
T |
|
| Q |
719 |
tcagag |
724 |
Q |
| |
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|||||| |
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| T |
38634433 |
tcagag |
38634438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 45335575 - 45335472
Alignment:
| Q |
56 |
gagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttgaaattgaaaaaattgcatcacgagga |
155 |
Q |
| |
|
||||| |||||| |||||||||||| |||| |||||| ||||||||||||| ||||||||||||||| ||||| |||| |||||| |||||||| ||||| |
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| T |
45335575 |
gagaactatattatttgagagaaaagttgaaagagaatcataagaaaaagggtgaagcatatcaaagaattttaaaatcgaaaaatttgcatcatgagga |
45335476 |
T |
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| Q |
156 |
ggta |
159 |
Q |
| |
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|||| |
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| T |
45335475 |
ggta |
45335472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 410 - 557
Target Start/End: Original strand, 29423962 - 29424102
Alignment:
| Q |
410 |
ctatttatatacaaatgagactctatgctagcttattgtgtaagtaaccacacatgattactaaattaaactgactaactagataacttgtggcctaagt |
509 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||| | |||||| | |||||||||||||||| |||||||| |
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| T |
29423962 |
ctatttatatacaaatgagactctatgctatcttattgtgtgagtaa--tcacataatt-----agtaaactaattaactagataacttgttgcctaagt |
29424054 |
T |
|
| Q |
510 |
aatctagttttcacttatttgttcactatcatcttcatgatgcaataa |
557 |
Q |
| |
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||||| |||||||| || | || ||||||||||||| |||| ||||| |
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| T |
29424055 |
aatctgtttttcactaatctatttactatcatcttcaagatgtaataa |
29424102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 13070 - 13167
Alignment:
| Q |
41 |
tagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttgaaattgaaa |
138 |
Q |
| |
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||||||| |||||| || |||||||||| |||||||||||||||| ||||| |||| |||||| |||||||| | ||||||||||||||||||||| |
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| T |
13070 |
tagaagccataaacggaaaattatattcattgagagaaaaattgaatcagaagtataacaaaaagtatgaagcaaagcaaaggattttgaaattgaaa |
13167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 42621547 - 42621600
Alignment:
| Q |
410 |
ctatttatatacaaatgagactctatgctagcttattgtgtaagtaaccacaca |
463 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| |||||| |||||| |
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|
| T |
42621547 |
ctatttatatacaaatgaagctctatgctagcttattgtgcaagtaatcacaca |
42621600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 10434107 - 10434149
Alignment:
| Q |
209 |
tgtcatttgttttgacaaattgacatcgatcaagtcattgtct |
251 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
10434107 |
tgtcattgcttttgtcaaattgacatcgatcaagtcattgtct |
10434149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 461
Target Start/End: Complemental strand, 45639648 - 45639551
Alignment:
| Q |
364 |
tgaatgaa-atagtgaattcaatgattgaatattgaatgtacaattgctatttatatacaaatgagactctatgctagcttattgtgtaagtaaccaca |
461 |
Q |
| |
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|||||||| ||||||||| || | ||||| || ||| ||||||| ||||||||||||||||||| ||| ||| |||||||||||| |||||| |||| |
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| T |
45639648 |
tgaatgaatatagtgaatccattaattga-taatgactgtacaagtgctatttatatacaaatgtagctcaatggtagcttattgtgcaagtaatcaca |
45639551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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