View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_30 (Length: 316)
Name: NF15126_low_30
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 5446097 - 5446384
Alignment:
| Q |
18 |
tttggttgaggtaaaaattagtaaaagccaagttcatgagtttgttcttgtaggagggtctactagaattccgaagattcaacaactattgaagaatatg |
117 |
Q |
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| T |
5446097 |
tttggttgaggtaaaaattagtaaaagccaagttcatgagtttgttcttgtaggagggtctactacaattccgaagattcaacaactattgaagaatatg |
5446196 |
T |
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| Q |
118 |
tttagagtcaacgatgaagtcaaagagccttgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttcaagcagcaataatattgaata |
217 |
Q |
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| T |
5446197 |
tttagagtcaacgatgaagtcaaagagccttgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttcaagcagc---aatattgaata |
5446293 |
T |
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| Q |
218 |
ctgaaggagacaagaaaatcgaagacttgttactgttggatgttatgccttttagtcttggtgttgaaactaaaggcggtgtcatgtctgt |
308 |
Q |
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| T |
5446294 |
ctgaaggagacaagaaaatcgaagacttgttactgttggatgttatgccttttagtcttggtgttgaaactaaaggtggtgtcatgtctgt |
5446384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 304
Target Start/End: Complemental strand, 5433183 - 5433001
Alignment:
| Q |
119 |
ttagagtcaacgatgaagtcaaagagccttgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttcaagcagcaataatattgaatac |
218 |
Q |
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| T |
5433183 |
ttagagtcaatggagaaatcaaagagccatgcaaaagcattaatccttatgaagttgtggtgtatgatgcctcggttcaagcagcgata---ttgagtgt |
5433087 |
T |
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| Q |
219 |
tgaaggagacaagaaaatcgaagacttgttactgttggatgttatgccttttagtcttggtgttgaaactaaaggcggtgtcatgt |
304 |
Q |
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| T |
5433086 |
tgaaggagacaagaaaattcaagacttgttgttgttagatgttatacctcacagtcttggtgttgaaactgatggtggtgtcatgt |
5433001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 7541936 - 7541887
Alignment:
| Q |
148 |
tgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttca |
197 |
Q |
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| T |
7541936 |
tgcaagagcattaatcctgatgaggctgttgcttatggggcagctgttca |
7541887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 14703118 - 14703069
Alignment:
| Q |
148 |
tgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttca |
197 |
Q |
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| T |
14703118 |
tgcaacagcattaaccctgatgaagctgtagcttatggggcagctgttca |
14703069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 17704436 - 17704485
Alignment:
| Q |
59 |
ttgttcttgtaggagggtctactagaattccgaagattcaacaactattg |
108 |
Q |
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| T |
17704436 |
ttgtccttgtaggaggttctaccagaattccaaaggttcaacaactattg |
17704485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 17717068 - 17717117
Alignment:
| Q |
59 |
ttgttcttgtaggagggtctactagaattccgaagattcaacaactattg |
108 |
Q |
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| T |
17717068 |
ttgtccttgtaggaggttctaccagaattccaaaggttcaacaactattg |
17717117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 11999118 - 11999066
Alignment:
| Q |
148 |
tgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttcaagc |
200 |
Q |
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| T |
11999118 |
tgcaagagcattaaccctgatgaggctgtagcttatggggcagctgttcaagc |
11999066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 54396142 - 54396078
Alignment:
| Q |
139 |
aaagagccttgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttcaagcagc |
203 |
Q |
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| T |
54396142 |
aaagagctttgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttcaagcagc |
54396078 |
T |
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