View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_31 (Length: 316)
Name: NF15126_low_31
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 24126782 - 24127078
Alignment:
| Q |
1 |
agcaagcccagtaaatacaatacgacatatcattgtcccgatgttgacgactccacaatatcattgttttctccttcacctgctactaaaggttcctggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24126782 |
agcaagcccagtaaatacaatacgacatatcattgtcccgatgttgacgactccacaatatcattgttttctcctccacctgctactaaaggttcctggt |
24126881 |
T |
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| Q |
101 |
tctttctaacattctcctgcaagtgttttacccattcccaagttgttgggtcctcctgaaaataatatcaaatatgagaatcaactctttcaaaagatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24126882 |
tctttctaacattctcctgcaagtgttttacccactcccaagttgttgggtcctcctgaaaataatatcaaatatgacaatcaactctttcaaaagatat |
24126981 |
T |
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| Q |
201 |
tgttgttgtggataaaaacaggtcttagtaacattaaatcatatcctatatatatgaaacaagttatgaatcaaatttgtatatagttatgtgaaagg |
298 |
Q |
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| T |
24126982 |
tgttgttgtggataaaaacaggtctt-gtaacattaaatcatatcctatctatatgaaacaagttatgaatcaaatttgtatatagttatgtgaaagg |
24127078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 45161797 - 45161636
Alignment:
| Q |
13 |
aaatacaatacgacatatcattgtcccgatgttgacgactccacaatatcattgttttctccttcacctgctactaaaggttcctggttctttctaacat |
112 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
45161797 |
aaatgcaatacgacatatcattgtccagatgttgacgactccataatatcattgttttctcctccaccttctactaaaggttcctggttcttttcaacat |
45161698 |
T |
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| Q |
113 |
tctcctgcaagtgttttacccattcccaagttgttgggtcctcctgaaaataatatcaaata |
174 |
Q |
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| T |
45161697 |
tctcctgcaagtgctttacccacttccatgttgctgggtcttcctgaaaataatatcaaata |
45161636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 188 - 296
Target Start/End: Complemental strand, 45161297 - 45161190
Alignment:
| Q |
188 |
tttcaaaagatattgttgttgtggataaaaacaggtcttagtaacattaaatcatatcctatatatatgaaacaagttatgaatcaaatttgtatatagt |
287 |
Q |
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||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
45161297 |
tttcaaaagatattgttgttggtgttaaaaacaggtctt-gtaacattaaatcatatcctatctatatcaaacaagttatgaatcaaatttgtatatagt |
45161199 |
T |
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| Q |
288 |
tatgtgaaa |
296 |
Q |
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||||||||| |
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| T |
45161198 |
tatgtgaaa |
45161190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 8715948 - 8716053
Alignment:
| Q |
191 |
caaaagatattgttgttgtggataaaaacaggtcttagtaacattaaatcatatcctatatatatgaaacaagttatgaatcaaatttgtatatagttat |
290 |
Q |
| |
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||||||||||||||| || ||||||| |||||||| |||||||||||| ||| ||| || || ||||||||||||||||||| ||||||| | || | |
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| T |
8715948 |
caaaagatattgttgctgctgataaaatcaggtctt-gtaacattaaatattatgatatcta-atcaaacaagttatgaatcaaaattgtataaaattgt |
8716045 |
T |
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| Q |
291 |
gtgaaagg |
298 |
Q |
| |
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|||||||| |
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| T |
8716046 |
gtgaaagg |
8716053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 9067835 - 9067940
Alignment:
| Q |
191 |
caaaagatattgttgttgtggataaaaacaggtcttagtaacattaaatcatatcctatatatatgaaacaagttatgaatcaaatttgtatatagttat |
290 |
Q |
| |
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||||||||||||||| || ||||||| |||||||| |||||||||||| ||| ||| || || ||||||||||||||||||| ||||||| | || | |
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| T |
9067835 |
caaaagatattgttgctgctgataaaatcaggtctt-gtaacattaaatattatgatatcta-atcaaacaagttatgaatcaaaattgtataaaattgt |
9067932 |
T |
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| Q |
291 |
gtgaaagg |
298 |
Q |
| |
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|||||||| |
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| T |
9067933 |
gtgaaagg |
9067940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 8722343 - 8722426
Alignment:
| Q |
211 |
gataaaaacaggtcttagtaacattaaatcatatcctatatatatgaaacaagttatgaatcaaatttgtatatagttatgtgaaa |
296 |
Q |
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| T |
8722343 |
gataaaaacaggtctc-gtaacattaaatcttatgatatcta-atcaaacaagttatgaatcaaaattgtataaagttgtgtgaaa |
8722426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 9074230 - 9074313
Alignment:
| Q |
211 |
gataaaaacaggtcttagtaacattaaatcatatcctatatatatgaaacaagttatgaatcaaatttgtatatagttatgtgaaa |
296 |
Q |
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||||||||||||||| ||||||||||||| ||| ||| || || ||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
9074230 |
gataaaaacaggtctc-gtaacattaaatcttatgatatcta-atcaaacaagttatgaatcaaaattgtataaagttgtgtgaaa |
9074313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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