View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_33 (Length: 308)
Name: NF15126_low_33
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 9166508 - 9166212
Alignment:
| Q |
14 |
agatgaataataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaagttaga |
113 |
Q |
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| T |
9166508 |
agatgaataataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaagttaga |
9166409 |
T |
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| Q |
114 |
tgacaaagaaagcaacgcaggtggtgggagaagccgtnnnnnnnctggtgatga------------tccttcctctgataaaggagaggaagatgaagat |
201 |
Q |
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| T |
9166408 |
tgacaaagaaagcaacgcaggtggtgggagaagccgtaaaaaaactggtgatgatgatgatgaaggtccttcctctgataaaggagaggaagatgaagat |
9166309 |
T |
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| Q |
202 |
gaggaagtagataagaagaacagacatggactgaatnnnnnnngtggctatgatgacgatgaaggtccaaggggaggggaccttgatgaggatgatg |
298 |
Q |
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| T |
9166308 |
gaggaagtagataagaagaatagacatggactgaataaaaaaagtggctatgatgacgatgaaggtccaaggggaggggaccttgatgatgatgatg |
9166212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 9155091 - 9154867
Alignment:
| Q |
14 |
agatgaataataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaagttaga |
113 |
Q |
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| T |
9155091 |
agatgaaaaataggaaaaaaactgctgatggatatcaaagatggatgatgaaagcagcaaacaatgggcctgctgcatttggtgaacatgggaagttaga |
9154992 |
T |
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| Q |
114 |
tgacaaagaaagcaacgcaggtggtgggagaagccgtnnnnnnnctggtgatga------------tccttcctctgataaaggagaggaagatgaagat |
201 |
Q |
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| T |
9154991 |
tgacaaggagagcaacgcagggggtgggagaggccgtaaaaagactggtgatgatgaagatgaaggtccttcctctgataaaggagaggaagatgaagac |
9154892 |
T |
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| Q |
202 |
gaggaagtagataagaagaacagac |
226 |
Q |
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| T |
9154891 |
gaggaagtagataggaagaaaagac |
9154867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 9154845 - 9154799
Alignment:
| Q |
251 |
atgatgacgatgaaggtccaaggggaggggaccttgatgaggatgat |
297 |
Q |
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| T |
9154845 |
atgatgatgaagaaggtccaaggggaggggaccatgatgaggatgat |
9154799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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