View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15126_low_35 (Length: 278)
Name: NF15126_low_35
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_35 |
 | |
|
| [»] scaffold0505 (1 HSPs) |
| | |
|
| [»] scaffold0037 (1 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0315 (1 HSPs) |
| | |
|
| [»] scaffold0226 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0505 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0505
Description:
Target: scaffold0505; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 11411 - 11161
Alignment:
| Q |
11 |
catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11411 |
catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgata |
11312 |
T |
|
| Q |
111 |
ttggaccccctttgattgagtgctcttttcatcagttcttacattcttcacatttctaggttctgatgttggacctgatgttctgaacatttgacctagg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11311 |
ttggaccccctttgattgagtgctcttttcatcagttcttacattcttgacatttctaggttctgatgttggacctgatgttctgaacatttgacctagg |
11212 |
T |
|
| Q |
211 |
tcttctgtcaacttgtttcaagattctcctgaactgttttccaagaagcac |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11211 |
tcttctgtcaacttgtttcaagattctcctgaactgttttcctagaagcac |
11161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 13086495 - 13086245
Alignment:
| Q |
11 |
catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13086495 |
catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttttgatgtgaccatatccttcacattcatgata |
13086396 |
T |
|
| Q |
111 |
ttggaccccctttgattgagtgctcttttcatcagttcttacattcttcacatttctaggttctgatgttggacctgatgttctgaacatttgacctagg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13086395 |
ttggaccccctttgattgagtgctcttttcatcagttcttacattcttgacatttctaggttctgatgttggacctgatgttctgaacatttgacctagg |
13086296 |
T |
|
| Q |
211 |
tcttctgtcaacttgtttcaagattctcctgaactgttttccaagaagcac |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13086295 |
tcttctgtcaacttgtttcaagattctcctgaactgttttcctagaagcac |
13086245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 294429 - 294531
Alignment:
| Q |
11 |
catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgata |
110 |
Q |
| |
|
||||||||| |||||| |||||| || |||||||||||| || ||| | || ||||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
294429 |
catcatcatgagaccatgaaacagttaagcttttcttttgtttcttaagataagtagcacattctgttctaatgtgaccatatccttcacattcatgaca |
294528 |
T |
|
| Q |
111 |
ttg |
113 |
Q |
| |
|
||| |
|
|
| T |
294529 |
ttg |
294531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 2000867 - 2000799
Alignment:
| Q |
40 |
cttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatga |
108 |
Q |
| |
|
|||||||||||| |||||||| |||| ||||| ||| | || |||||||||||||||||||||||| |
|
|
| T |
2000867 |
cttttcttttgtttcttgagaaaagtggtacattctgtcataatatgaccatatccttcacattcatga |
2000799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 20590092 - 20589957
Alignment:
| Q |
11 |
catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgata |
110 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | |
|
|
| T |
20590092 |
catcttcatcagaccaagaaacaaccaagattttcttttgtctcttgagaaatgtggcacattttgatctaatgtgaccatatccttcacattcatgaca |
20589993 |
T |
|
| Q |
111 |
ttggaccccctttgattgagtgctcttttcatcagt |
146 |
Q |
| |
|
||||| ||||| |||||| ||||||| |||||||| |
|
|
| T |
20589992 |
ctggactcccttggattgactgctcttctcatcagt |
20589957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 7587852 - 7587704
Alignment:
| Q |
16 |
tcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattgga |
115 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||| ||||| || |||||||||| |||||||||| |||||||||||||||||||||| |||| | |
|
|
| T |
7587852 |
tcatcagaccaagaaacaaccaagcttttcttctgtttcttgaggaaagtggcacattcagttctgatgtaaccatatccttcacattcatgacattgaa |
7587753 |
T |
|
| Q |
116 |
ccccctttgattgagtgctcttttcatcagttcttacattcttcacatt |
164 |
Q |
| |
|
| ||||| |||||| || | || ||||||| | |||| ||||||||||| |
|
|
| T |
7587752 |
ctcccttggattgattgttattgtcatcagattttaccttcttcacatt |
7587704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 12324611 - 12324744
Alignment:
| Q |
17 |
catcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattggac |
116 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| ||| ||| ||||| | |||||||| ||||||||| || |||||||||||||| |||||| |||| || |
|
|
| T |
12324611 |
catctgaccaagaaacaaccaaacttttcttctgtttttttagaaaagaggcacattatgttctgatatgcccatatccttcacactcatgacattgaac |
12324710 |
T |
|
| Q |
117 |
cccctttgattgagtgctcttttcatcagttctt |
150 |
Q |
| |
|
|| || |||||| |||||||||||| |||| |
|
|
| T |
12324711 |
acctttgtattgagaattcttttcatcagatctt |
12324744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 21259286 - 21259378
Alignment:
| Q |
17 |
catcagaccaagaaacaaacaaacttttcttttgtcctttga-gaaatgtggcacattttgttctgatgtgaccatatccttcacattcatga |
108 |
Q |
| |
|
|||| ||||| ||||||| ||| |||||||||| | |||| | |||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
21259286 |
catctgaccatgaaacaaccaagcttttctttttttcttttaagaaaggtggcacattctgttctgatgtgaccatggccttcacattcatga |
21259378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 248
Target Start/End: Complemental strand, 13393411 - 13393233
Alignment:
| Q |
75 |
tgttctgatgtgaccatatccttcacattcatgatattggaccccctttgattgagtgctcttttcatcagttcttacattcttcacatttctaggtt-- |
172 |
Q |
| |
|
|||||||||||| ||| | ||||||| |||||| | || || ||||||||||||||| ||| |||||||||||| ||| ||||||| || | ||| |
|
|
| T |
13393411 |
tgttctgatgtgtccaaacccttcaccttcatggcactgaactccctttgattgagtgtccttctcatcagttcttgtatttttcacatatccatgttga |
13393312 |
T |
|
| Q |
173 |
ctg---atgttggacctgatgttctgaacatttgacctaggtcttctgtcaacttgtttcaagattctcctgaactgtt |
248 |
Q |
| |
|
||| |||||| ||||||||||||||||||| | ||| | | | ||||||||||||||||| ||| ||||||||| |
|
|
| T |
13393311 |
ctgtcaatgttgtacctgatgttctgaacattcgttctaagccaattctcaacttgtttcaagatcctcatgaactgtt |
13393233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 11587264 - 11587343
Alignment:
| Q |
29 |
aaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatga |
108 |
Q |
| |
|
||||| ||| |||||||||||| |||| ||| |||| ||||| |||||| |||||||||||||||||||| |||||| |
|
|
| T |
11587264 |
aaacagacagacttttcttttgcttcttgataaaagtggtacattctgttctaatgtgaccatatccttcacactcatga |
11587343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 27109856 - 27109977
Alignment:
| Q |
18 |
atcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattggacc |
117 |
Q |
| |
|
||||||||| ||||||| ||| ||||| || | || |||| ||||| |||||||| |||| | |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
27109856 |
atcagaccacgaaacaaccaagcttttattgtctc--ttgaaaaatgcggcacattctgtttttatgtgaccatatccatcacattcatgacattggact |
27109953 |
T |
|
| Q |
118 |
ccctttgattgagtgctcttttca |
141 |
Q |
| |
|
|||| ||||| ||||||||||| |
|
|
| T |
27109954 |
gccttgaattgattgctcttttca |
27109977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 21529173 - 21529259
Alignment:
| Q |
36 |
caaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattggaccccctt |
122 |
Q |
| |
|
|||| |||| ||||||| ||| ||||| || || ||| |||||| || |||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
21529173 |
caaaattttattttgtcttttaagaaaagtatcatattctgttctaatatgaccatatccttcacattcatgacattgaacaccctt |
21529259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 15701617 - 15701532
Alignment:
| Q |
23 |
accaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatga |
108 |
Q |
| |
|
|||| |||||| |||| ||||||||||| |||||||||||||||||||| || || ||||| |||||||||||||||||||| |
|
|
| T |
15701617 |
accaggaaacagacaagtttttcttttgtttcttgagaaatgtggcacatttcgtcctaatgtgtacatatccttcacattcatga |
15701532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 19076371 - 19076451
Alignment:
| Q |
28 |
gaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatga |
108 |
Q |
| |
|
||||||| ||| |||||||||||| || ||||| |||| ||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
19076371 |
gaaacaatcaagcttttcttttgtttcttaagaaaagtggtacattttgtcctaaggtgaccatatccttcacattcatga |
19076451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 25803393 - 25803489
Alignment:
| Q |
11 |
catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatg |
107 |
Q |
| |
|
|||||||||||||||| ||||||| || |||||||| ||| || || || || ||||||| ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
25803393 |
catcatcatcagaccaggaaacaattaagcttttcttctgtttctttagtaaagtagcacattctgtcctgatatgaccatatccttcacattcatg |
25803489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 12386447 - 12386319
Alignment:
| Q |
80 |
tgatgtgaccatatccttcacattcatgatattggaccccctttgattgagtgctcttttcatcagttcttacattcttcacatttctaggtt-----ct |
174 |
Q |
| |
|
||||||| ||| | |||| ||||||| || ||||||| ||||| ||||||||| ||||| ||||||||||| ||| ||||||| | | ||| || |
|
|
| T |
12386447 |
tgatgtgtccaaaccctttacattcaagacattggactcccttagattgagtgtccttttgatcagttcttatatttttcacatattcaagttgattgct |
12386348 |
T |
|
| Q |
175 |
gatgttggacctgatgttctgaacatttg |
203 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
12386347 |
aatgttggacctgatgttctgaatatttg |
12386319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 111610 - 111536
Alignment:
| Q |
39 |
acttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattg |
113 |
Q |
| |
|
||||||||||||| || ||||| || ||||||||||| ||||| || ||||||||||||||||||||| |||| |
|
|
| T |
111610 |
acttttcttttgtttcttcagaaaagtagcacattttgtactgatatggccatatccttcacattcatgacattg |
111536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 22406085 - 22406039
Alignment:
| Q |
67 |
gcacattttgttctgatgtgaccatatccttcacattcatgatattg |
113 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
22406085 |
gcacattctgttctgatatgaccatatccttcacattcatgacattg |
22406039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 17917513 - 17917424
Alignment:
| Q |
55 |
ttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattggaccccctttgattgagtgctcttttcatca |
144 |
Q |
| |
|
|||||||| || ||||||| ||||||||||| ||||| ||||||||||||||| |||| || || || ||||| || ||||||||||| |
|
|
| T |
17917513 |
ttgagaaaagtagcacattcagttctgatgtgtccataaccttcacattcatgacattgaacacctttgtattgattgttcttttcatca |
17917424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 51472 - 51376
Alignment:
| Q |
11 |
catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatg |
107 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||| ||| || |||||||| ||||||| ||||||||| || ||||| |||||||||||||| |
|
|
| T |
51472 |
catcatcatctgaccagaaaacagttaaacttttcttctgtttctttagaaatgttgcacattctgttctgatatgcccatacccttcacattcatg |
51376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0315 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0315
Description:
Target: scaffold0315; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 12390 - 12329
Alignment:
| Q |
55 |
ttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattggac |
116 |
Q |
| |
|
|||||||| || ||||||| ||||| ||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
12390 |
ttgagaaaagtagcacattcagttcttatgtgtccataaccttcacattcatgacattggac |
12329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 8883 - 8814
Alignment:
| Q |
37 |
aaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcat |
106 |
Q |
| |
|
||||||||||| ||| || ||||| || ||||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
8883 |
aaacttttcttctgtttctttagaaaagtagcacattctgttctgatatggccatatccttcacattcat |
8814 |
T |
|
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 17852703 - 17852639
Alignment:
| Q |
58 |
agaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattggaccccctt |
122 |
Q |
| |
|
||||| |||| ||||| |||| |||| ||||||||||||||||| |||||| |||| || ||||| |
|
|
| T |
17852703 |
agaaaagtggtacattatgttttgatatgaccatatccttcacactcatgacattgaacaccctt |
17852639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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