View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_38 (Length: 268)
Name: NF15126_low_38
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 43895592 - 43895826
Alignment:
| Q |
12 |
agagatcatatcaggaagatcaaaattgatgcctttgagtatgtttggatatttgttcataatcatgttgagactcacaccagaattgccaccaacatca |
111 |
Q |
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| T |
43895592 |
agagatcatatcaggaagatcaaaattgatgcctttgagtatgtttggatatttgttcataatcatgttgagactcacaccagaattgccaccaacatca |
43895691 |
T |
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| Q |
112 |
actagagtctccacacctttgaagccatcataattctccaacatttctctcatgtagggcaatgacatcccagacatggaagcataaaacaaactcattt |
211 |
Q |
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| T |
43895692 |
actagagtctccacacctttgaagccatcataattctccaacatttccctcatgtagggcaatgacatcccagacatggaagcataaaacaaactcattt |
43895791 |
T |
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| Q |
212 |
cttctggtcccttcgtgcaatatgcatatgctgct |
246 |
Q |
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| T |
43895792 |
cttctggtcccttcgtgcaatatgcatatgctgct |
43895826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 43907100 - 43907327
Alignment:
| Q |
16 |
atcatatcaggaagatcaaaattgatgcctttgagtatgtttggatatttgttcataatcatgttgagactcacaccagaattgccaccaacatcaacta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| |
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| T |
43907100 |
atcatatcaggaagatcaaaattgatgcctttgagtatgtttggatatttgttcataatcatattgagaatcacaccagaatttccaccaacatcaacta |
43907199 |
T |
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| Q |
116 |
gagtctccacacctttgaagccatcataattctccaacatttctctcatgtagggcaatgacatcccagacatggaagcataaaacaaactcatttcttc |
215 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||||| ||||||||||||||||| || |
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| T |
43907200 |
gagattccacacctttgaagccatcatacttctccaacatttcattcatgtggggcattgacattccagacatggaagcgtaaaacaaactcatttcatc |
43907299 |
T |
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| Q |
216 |
tggtcccttcgtgcaatatgcatatgct |
243 |
Q |
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| T |
43907300 |
tggtctcttcatgcagtatgcatatgct |
43907327 |
T |
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