View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15126_low_40 (Length: 267)
Name: NF15126_low_40
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_40 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 43895332 - 43895584
Alignment:
| Q |
17 |
tgtgttatacctatatacatgccacaaaagttaaataaattgaataaatatgttcgtaaactaatacggcatattctaaaatttaataaaattagtccgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43895332 |
tgtgttatacctatatacatgccacaaaagttaaataaattgaataaatatgtttgtaaactaatacagcatattctaaaatttaataaaattagtccgt |
43895431 |
T |
|
| Q |
117 |
ggacaaaccaaaatactaacatgg--tcggtccactaatannnnnnnnaaggatggtcggtccactaatatttgtcaatctaactttattttttcaaatt |
214 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43895432 |
ggacaaaccaaaaaactaacatggtctcggtccactaatattttttttaaggatggtcggtccactaatatttgtcaatctaactttattttttcaaatt |
43895531 |
T |
|
| Q |
215 |
aggttccaaaatggtagtgacccaaaaaatagactaattacctggatattgag |
267 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43895532 |
aggttccaaaatggtggtgacccaaaaaatagactaattacctggatattgag |
43895584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 43906991 - 43907030
Alignment:
| Q |
177 |
cactaatatttgtcaatctaactttattttttcaaattag |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43906991 |
cactaatatttgtcaatctaactctattttttcaaattag |
43907030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 43906676 - 43906720
Alignment:
| Q |
39 |
cacaaaagttaaataaattgaataaatatgttcgtaaactaatac |
83 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
43906676 |
cacaagagttaaataaattgaataaatttgtttgtaaactaatac |
43906720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University