View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15126_low_43 (Length: 256)
Name: NF15126_low_43
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_43 |
 | |
|
| [»] chr2 (6 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 11720771 - 11721030
Alignment:
| Q |
1 |
gagctaaaacaggcagcaagaatgagagattagccatttgataacaactttgaaactcg-------cgagccctagaataattttaagatagaaatttgt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || | ||||||||| |||||||||||||||||||||| |
|
|
| T |
11720771 |
gagctaaaacaggcagcaagaatgagagattagccatttgaataaaactttgaaacccgaaacttgcaagccctagattaattttaagatagaaatttgt |
11720870 |
T |
|
| Q |
94 |
------------ggtatttgtggatgaatattggcatcgtattaaggactatttatattgaatttgtacgtggggttgcattaaggcatacgtaccactt |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11720871 |
actatgaattgtggtatttgtggatgaatattggcatcgtattaaggcctatttatattgaatttgtacgtggggttgcat----gcatacgtac----- |
11720961 |
T |
|
| Q |
182 |
ataaatctatnnnnnnnnnntgtgttggttgcaagcccacaatcacaaatatgccgtcctaacttaaaaatgaaa |
256 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11720962 |
ataaatctatagaaaa------tgttggttgcattcccacaatcacaaatatgccgtcctaacttaaaaatgaaa |
11721030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 11712320 - 11712158
Alignment:
| Q |
1 |
gagctaaaacaggcagcaagaatgagagattagccatttgataacaactttgaaactcgcgagccctagaataattttaagatagaaatttgt------- |
93 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
11712320 |
gagctaaaacagacagcaagaatgagggattagccatttgataagaactttgaaacttgcaagccctagaataattttaagatagaaatttgtattatga |
11712221 |
T |
|
| Q |
94 |
-----ggtatttgtggatgaatattggcatcgtattaaggactatttatattgaatttgtacg |
151 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | ||| ||||| ||||||||||| |
|
|
| T |
11712220 |
attgcggtatttgtggatgaatattggcttcgtattaaagcttatatatatggaatttgtacg |
11712158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 11729944 - 11730030
Alignment:
| Q |
14 |
cagcaagaatgagagattagccatttgataacaactttgaaactc-------gcgagccctagaataattttaagatagaaatttgt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
11729944 |
cagcaagaatgagagattagccatttgataacaactttgaaactcgaaacttgcaagccctagaataattttaagatagaaatttgt |
11730030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 11690085 - 11690033
Alignment:
| Q |
204 |
tgttggttgcaagcccacaatcacaaatatgccgtcctaacttaaaaatgaaa |
256 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11690085 |
tgttggttgcatgcccacaatcacaaatatgccgtcctaacttaaaaatgaaa |
11690033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11672584 - 11672642
Alignment:
| Q |
1 |
gagctaaaacaggcagcaagaatgagagattagccatttgataacaactttgaaactcg |
59 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
11672584 |
gagctaaaagaggcagcatgagtgagagattagccatttgataagaactttaaaactcg |
11672642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 11730041 - 11730119
Alignment:
| Q |
92 |
gtggtatttgt-ggatgaatattggcatcgtattaaggactat----ttatattgaatttgtacgtggggttgcattaa |
165 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||| | |||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
11730041 |
gtggtatttgttggatgaatattggcgtcgtattaaagcctatttaattatattgaatttgtacttggcattgcattaa |
11730119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 7662538 - 7662685
Alignment:
| Q |
1 |
gagctaaaacaggcagcaagaatgagagattagccatttgataacaactttgaaactcgcgagccctagaataattttaagatagaaatttgtggtattt |
100 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| | ||| |||| | | |||| ||| || || |||| ||||| |
|
|
| T |
7662538 |
gagctaaaacagggggcaagtatgagagattagccatttgataaaaactttgaaacttgaaagctctagtagatttttgagacaggaa-ttgtagtattg |
7662636 |
T |
|
| Q |
101 |
gtggatgaatattggcatcgtattaaggactatttatattgaatttgta |
149 |
Q |
| |
|
|| |||||||||||| || |||| |||| || ||||||| |||||||| |
|
|
| T |
7662637 |
gttgatgaatattggtattgtatcaaggcctgtttatatgaaatttgta |
7662685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University