View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_44 (Length: 250)
Name: NF15126_low_44
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_44 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 35865506 - 35865746
Alignment:
| Q |
10 |
agaagaacatgattatcaaaagaaggatggtgaaagccaaaacctctcatattgattgtgtggaactgcatcagcttggaaacgttcaggtaaggtaata |
109 |
Q |
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| T |
35865506 |
agaagaacatgattatcaaaagaaggatggtgaaagccaaaacctctcatattgattgtgtggaactgcatcagcttggaaacgttcaggtaaggtaata |
35865605 |
T |
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| Q |
110 |
ttgtccggatcagctgaaaattttaagagtcagcataggaatgcttagataaaatgccagcatgaaatgtttagcaaattaaaaaatgaaaaccttgatg |
209 |
Q |
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| T |
35865606 |
ttgtccggatcagctgaaaattttaagagtcaacataggaatgcttagataaaatgccaacatgaaatgtttagcaaatcaaaaaatgaaaaccttgatg |
35865705 |
T |
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| Q |
210 |
gtgatgcaccgatggatcttcctcctcaattcgttcattac |
250 |
Q |
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| T |
35865706 |
gtgatgcaccgatggatcttcctcctcaattcgttcattac |
35865746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 34815302 - 34815522
Alignment:
| Q |
32 |
aaggatggtgaaagccaaaacctctcatattgattgtgtggaactgcatcagcttggaaacgttcaggtaaggtaatattgtccggatcagctgaaaatt |
131 |
Q |
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| T |
34815302 |
aaggatggtggaagcaaaaacctctcaaaccgattgtaaggaaccgcatcagcttggaaaggttcaaatagggtaatattctcgggagcagctgacaatg |
34815401 |
T |
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| Q |
132 |
ttaa-gagtcagcataggaatgcttagataaaatgccagcatg-aaatgtttagcaaattaaaaaatgaaaaccttgatggtgatgcaccgatggatctt |
229 |
Q |
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| T |
34815402 |
ttaaagagtcagcataggaacaatcagacataatgcaaacatgtaaatgtttagcaaattcaaagatgaaaaccttgatggtgatgcaccgatggatctt |
34815501 |
T |
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| Q |
230 |
cctcctcaattcgttcattac |
250 |
Q |
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| T |
34815502 |
cctccacatttccttcattac |
34815522 |
T |
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