View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15126_low_45 (Length: 250)

Name: NF15126_low_45
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15126_low_45
NF15126_low_45
[»] chr8 (2 HSPs)
chr8 (7-121)||(14995705-14995819)
chr8 (171-226)||(14995873-14995928)
[»] chr7 (6 HSPs)
chr7 (7-121)||(22005365-22005479)
chr7 (7-121)||(3599475-3599589)
chr7 (7-121)||(7892141-7892255)
chr7 (171-226)||(7892034-7892089)
chr7 (171-226)||(22005258-22005313)
chr7 (171-226)||(3599641-3599696)
[»] chr4 (4 HSPs)
chr4 (7-121)||(41861098-41861212)
chr4 (7-121)||(52681118-52681232)
chr4 (171-226)||(41861266-41861321)
chr4 (171-226)||(52681009-52681064)
[»] chr2 (6 HSPs)
chr2 (7-121)||(13906647-13906761)
chr2 (7-121)||(26454292-26454406)
chr2 (7-121)||(40604129-40604243)
chr2 (171-226)||(13906560-13906615)
chr2 (171-226)||(26454182-26454237)
chr2 (171-226)||(40604023-40604078)
[»] chr1 (4 HSPs)
chr1 (7-121)||(2046474-2046588)
chr1 (7-120)||(35596178-35596290)
chr1 (171-226)||(2046641-2046696)
chr1 (171-226)||(35596345-35596400)
[»] chr3 (6 HSPs)
chr3 (7-121)||(26949905-26950019)
chr3 (7-117)||(18200181-18200291)
chr3 (7-121)||(36093028-36093142)
chr3 (171-226)||(18200067-18200122)
chr3 (171-226)||(26949791-26949846)
chr3 (171-226)||(36093201-36093256)
[»] chr6 (2 HSPs)
chr6 (7-117)||(3590031-3590141)
chr6 (175-226)||(3589924-3589975)
[»] chr5 (2 HSPs)
chr5 (7-121)||(32673656-32673769)
chr5 (171-226)||(32673544-32673599)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 14995705 - 14995819
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  14995705 aagtgtaacaacgaagcctatctgcaactttctggatagaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaaccatcagagaaa 14995804  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  14995805 gtgaggcaattttat 14995819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 14995873 - 14995928
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14995873 taataattagaatgaaacaattacataatgaaagttaaataaacaaacatacctgc 14995928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 22005479 - 22005365
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  22005479 aagtgtaacaacgaagcctatctgcaactttctggatagaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaaccatcagagaaa 22005380  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  22005379 gtgaggcaattttat 22005365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 3599475 - 3599589
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| | ||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  3599475 aagtgtaacaacgaagcctgtctgcaactttctggatagaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaaccatcagagaaa 3599574  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  3599575 gtgaggcaattttat 3599589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 7892255 - 7892141
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  7892255 aagtgtaacaacgaagcctatctgcaactttctggataaaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaaccatcagagaaa 7892156  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  7892155 gtgaggcaattttat 7892141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 7892089 - 7892034
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7892089 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 7892034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 22005313 - 22005258
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005313 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 22005258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 3599641 - 3599696
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599641 taatgattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 3599696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 41861098 - 41861212
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  41861098 aagtgtaacaacgaagcctatctgcaactttctggatagaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaaccatcagagaaa 41861197  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  41861198 gtgaggcaattttat 41861212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 52681232 - 52681118
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  52681232 aagtgtaacaacgaagcctatctgcaactttctggatagaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaaccatcagagaaa 52681133  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  52681132 gtgaggcaattttat 52681118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 41861266 - 41861321
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41861266 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 41861321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 52681064 - 52681009
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52681064 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 52681009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 13906761 - 13906647
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  13906761 aagtgtaacaacgaagcctatctgcaactttctggatagaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaaccatcagagaaa 13906662  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  13906661 gtgaggcaattttat 13906647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 26454406 - 26454292
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  26454406 aagtgtaacaacgaagcctatctgcaactttctggatagaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaaccatcagagaaa 26454307  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  26454306 gtgaggcaattttat 26454292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 40604243 - 40604129
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  40604243 aagtgtaacaacgaagcctatctgcaactttctggatagaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaaccatcagagaaa 40604144  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  40604143 gtgaggcaattttat 40604129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 13906615 - 13906560
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13906615 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 13906560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 26454237 - 26454182
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454237 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 26454182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 40604078 - 40604023
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40604078 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 40604023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 2046474 - 2046588
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  2046474 aagtgtaacaacgaagcctatctgcaactttctggatagaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaaccatcagagaaa 2046573  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  2046574 gtgaggcaattttat 2046588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 35596178 - 35596290
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| |||||||    
T  35596178 aagtgtaacaacgaagcctatctgcaactttttggatagaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaa-catcagagaaa 35596276  T
Q  107 gtgaggcaatttta 120  Q
    ||||||||||||||    
T  35596277 gtgaggcaatttta 35596290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 2046641 - 2046696
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2046641 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 2046696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 35596345 - 35596400
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35596345 taataattagaatgaagcaattacataatgaaagtgaaataaacaaacatacctgc 35596400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 26950019 - 26949905
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  26950019 aagtgtaacaacgaagcatatctgcaactttcgggatagaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaaccatcagagaaa 26949920  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  26949919 gtgaggcaattttat 26949905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 18200291 - 18200181
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  18200291 aagtgtaacaacgaagcctatctgcaaatttctggatagaaccaacccttccagcttcttggtgataaatccaacgacatagtgggaaccatcagagaaa 18200192  T
Q  107 gtgaggcaatt 117  Q
    |||||||||||    
T  18200191 gtgaggcaatt 18200181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 36093028 - 36093142
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||||| |||||||    
T  36093028 aagtgtaacaacgaagcctatctgcaactttctggatagaaccaacccttccagcttcttggtgataaatccaacgacatagcggggaccatcagagaaa 36093127  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  36093128 gtgaggcaattttat 36093142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 18200122 - 18200067
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18200122 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 18200067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 26949846 - 26949791
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26949846 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 26949791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 36093201 - 36093256
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36093201 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 36093256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 3590141 - 3590031
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||||    
T  3590141 aagtgtaacaacgaagcctatctgcaaatttctggatagaaccaacccttccagcttcttggtgataaatccaacgacataatgggaaccatcagagaaa 3590042  T
Q  107 gtgaggcaatt 117  Q
    |||||||||||    
T  3590041 gtgaggcaatt 3590031  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 3589975 - 3589924
Alignment:
Q  175 aattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3589975 aattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 3589924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 32673769 - 32673656
Alignment:
Q  7 aagtgtaacaaccgagcgtatctacaactttctggatagaaccaacccttccagctttttggtgataaaaccaacgacatagtgggaaccataagagaaa 106  Q
    ||||||||||||  ||| ||||| ||||||||||  ||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||    
T  32673769 aagtgtaacaacgaagcctatctgcaactttctgt-tagaaccaacccttccagcttcttggtgataaatccaacgacatagcgggaaccatcagagaaa 32673671  T
Q  107 gtgaggcaattttat 121  Q
    |||||||||||||||    
T  32673670 gtgaggcaattttat 32673656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 32673599 - 32673544
Alignment:
Q  171 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32673599 taataattagaatgaaacaattacataatgaaagtgaaataaacaaacatacctgc 32673544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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