View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_49 (Length: 248)
Name: NF15126_low_49
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 3988511 - 3988746
Alignment:
| Q |
1 |
aaaactccaattttattttattttaataaaacttgcagttgaatgctaggaataaatctgcagctgcagaatgctatacaagaacagaggtttgcctcga |
100 |
Q |
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| T |
3988511 |
aaaactccaattttattttattttaataaaacttgcagttgaatgctaggaataaatctgcagctgcagaatgctatacaagaacagaggtttgcctcga |
3988610 |
T |
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| Q |
101 |
aggtactagtactgccaagtgccacctgccaatacaaactttcatttgatttggcatgttttcttttttcgttcatttgtgcataaattacacaactcat |
200 |
Q |
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| T |
3988611 |
aggtactagtactgccaagtgccacctgccaatacaaactttcatttgatttggcatgttttcttttttcgttcatttgtgcataaattacacaactcat |
3988710 |
T |
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| Q |
201 |
aattgac-tttggcactacctaatgtaaactttcat |
235 |
Q |
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||||||| |||| ||||||||||||||||||||||| |
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| T |
3988711 |
aattgacttttgacactacctaatgtaaactttcat |
3988746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 3988737 - 3988769
Alignment:
| Q |
136 |
aaactttcatttgatttggcatgttttcttttt |
168 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3988737 |
aaactttcatttgatttggcatgttttcttttt |
3988769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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