View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_50 (Length: 246)
Name: NF15126_low_50
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 34671541 - 34671755
Alignment:
| Q |
13 |
aaaatccaaagcaatttttcacctcgttaacttcttcttcttgtttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34671541 |
aaaatccaaagcaatttttcacctcgttaacttcttcttcttgtttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactg |
34671640 |
T |
|
| Q |
113 |
caccaaatcactcggtcctttcacaagcgccttacagtggaaacactggattttcaccgcagacgacgcgatttgacatataggacaaggtaactgcacc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34671641 |
caccaaatcactcggtcctttcacaagcgccttacagtggaaacactggattttcaccgcagacgacgcgatttgacatataggacaaggtaactgcacc |
34671740 |
T |
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| Q |
213 |
actccaggtggtgcg |
227 |
Q |
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||||||||||||||| |
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| T |
34671741 |
actccaggtggtgcg |
34671755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 26965339 - 26965553
Alignment:
| Q |
13 |
aaaatccaaagcaatttttcacctcgttaacttcttcttcttgtttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965339 |
aaaatccaaagcaatttttcacctcgttaacttcttcttcttgtttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactg |
26965438 |
T |
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| Q |
113 |
caccaaatcactcggtcctttcacaagcgccttacagtggaaacactggattttcaccgcagacgacgcgatttgacatataggacaaggtaactgcacc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965439 |
caccaaatcactcggtcctttcacaagcgccttacagtggaaacactggattttcaccgcagacgacgcgatttgacatataggacaaggtaactgcacc |
26965538 |
T |
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| Q |
213 |
actccaggtggtgcg |
227 |
Q |
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||||||||||||||| |
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| T |
26965539 |
actccaggtggtgcg |
26965553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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