View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_54 (Length: 236)
Name: NF15126_low_54
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 18813763 - 18813990
Alignment:
| Q |
4 |
aaatgcatgcaaaacctttggaaaataaagatat----tttcggagccaaattattggcattattacctagttatccttct-----tttcttttccttca |
94 |
Q |
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| T |
18813763 |
aaatgcatgcaaaacctttggaaaaaaaaaaaaaaaaatttcggagccaaatcattagcattattacctagttatccttcttttcttttcttttccttca |
18813862 |
T |
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| Q |
95 |
ttagattcggagttgcagtttcatgtttttcaagtctacctagctttcttgatgtgcaagggtttcattgaaaatggagaattctctttactactaccac |
194 |
Q |
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| T |
18813863 |
ttagattcggagttgcagtttcatgttattcaagtctacctagctttcttgatgtgcaagggtttcattgaaaatggagaattctctttactactaccac |
18813962 |
T |
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| Q |
195 |
tactaggcttcatgacactattttattt |
222 |
Q |
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|| ||||||||||||| ||||||||||| |
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| T |
18813963 |
tattaggcttcatgactctattttattt |
18813990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 18814139 - 18814040
Alignment:
| Q |
43 |
gagccaaattattggcattattacctagttatccttcttttcttttccttcattagattcggagttgcagtttcatgtttttcaagtctacctagctttc |
142 |
Q |
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| T |
18814139 |
gagccaaatcattggtattattacttagttctccttcttttcttgtccttcattagatttggagttgcagtttcaagtttttcaagtcca-ctagctttc |
18814041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 11328083 - 11328288
Alignment:
| Q |
1 |
ctcaaatgcatgcaaaacctttggaaaataaagatatttt-cggagccaaattattggcattattacctagttatccttcttttcttttccttcattaga |
99 |
Q |
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| T |
11328083 |
ctcaaatgcatgcaaaacctttgaaaaa--aagttatttttcggagccaaatcattagcattattacttagttctccttatttgcttttccttcattaga |
11328180 |
T |
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| Q |
100 |
ttcggagttgcagtttcatgtttttcaagtctacctagctttcttgatgtgcaagggtttcattgaaaatggagaattctctttactactaccactacta |
199 |
Q |
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| T |
11328181 |
tttggagttgcagtttcatgtttttcaagtccatctagctttcttgatttgtaaggatttcattgaagatggagaattctctttactactaccactacta |
11328280 |
T |
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| Q |
200 |
ggcttcat |
207 |
Q |
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|||||||| |
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| T |
11328281 |
ggcttcat |
11328288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 11326153 - 11326070
Alignment:
| Q |
122 |
tttcaagtctacctagctttcttgatgtgcaagggtttcattgaaaatggagaattctctttactactaccactactaggcttc |
205 |
Q |
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| T |
11326153 |
tttcaagtccacctagctttcttgatgtgtaaggggttcatggaagatggagaattctctttactaccaccactactaggcttc |
11326070 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 11328830 - 11328757
Alignment:
| Q |
132 |
acctagctttcttgatgtgcaagggtttcattgaaaatggagaattctctttactactaccactactaggcttc |
205 |
Q |
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| T |
11328830 |
acctagctttcttgatgtgtaaggggttcatggaagatggagaattctcttttttactaccactactaggcttc |
11328757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 35869115 - 35868994
Alignment:
| Q |
86 |
tttccttcattagattcggagttgcagtttcatgtttttcaagtctacc--tagctttcttgatgtgcaagggtttcattgaaaatggagaattctcttt |
183 |
Q |
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| T |
35869115 |
tttccttcattagattcggagttgaaggttcatgttttttagatccaccgacagctttcttgatgtgtaaggttttcaccgaagacagagaattctcttt |
35869016 |
T |
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| Q |
184 |
actactaccactactaggcttc |
205 |
Q |
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||||| |||| | ||||||||| |
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| T |
35869015 |
actaccaccagtcctaggcttc |
35868994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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