View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15126_low_55 (Length: 233)
Name: NF15126_low_55
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_55 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 28035918 - 28036150
Alignment:
| Q |
1 |
tcaaattctctccctttgatactcgtccccgctatagatacattgtggttattgtggctgtggctgttgatgttgatgttgtgctttacaacatcgttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28035918 |
tcaaattctctccctttgatactcgtccccgctatagatacattgtggttattgtggctgtggctgttgatgttgatgttgtgcttttcaacatcgttgg |
28036017 |
T |
|
| Q |
101 |
cattatcttctttagaatccttactattatttccctttatggctattgtgttagagatgacattatgcatttggttagatgtttgattagtacctgggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28036018 |
cattatcttctttagaatccttactattatttccctttatggctattgtgttagagatgacattatgcatttggttagatgtttgattagtacctgggtg |
28036117 |
T |
|
| Q |
201 |
agcaacaagcttataatcttcatgagcaccttt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
28036118 |
agcaacaagcttataatcttcatgagcaccttt |
28036150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University