View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_56 (Length: 230)
Name: NF15126_low_56
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_56 |
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| [»] scaffold0035 (4 HSPs) |
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| [»] scaffold0001 (2 HSPs) |
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| [»] scaffold0158 (2 HSPs) |
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Alignment Details
Target: scaffold0035 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 87780 - 87673
Alignment:
| Q |
105 |
cagtcatcgctgttctaattccgaattaagctgttgccgggttattaatttctctgttgctgcggtttggaatgggtgtttgttaaattagcttattttc |
204 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
87780 |
cagtcatcgctgttctaattccgaattaagctgctgccgtgttatttatttctctgttgctgcggtttggaatgggtgttcgttaaattagcttattttc |
87681 |
T |
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| Q |
205 |
attctctg |
212 |
Q |
| |
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|||||||| |
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| T |
87680 |
attctctg |
87673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 97473 - 97366
Alignment:
| Q |
105 |
cagtcatcgctgttctaattccgaattaagctgttgccgggttattaatttctctgttgctgcggtttggaatgggtgtttgttaaattagcttattttc |
204 |
Q |
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||||||||| ||||||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
97473 |
cagtcatcgttgttctaattccgaattaagctgctgtcgtgttatttatttctctgttgctgcggtttggaatgggtgttcgttaaattagcttattttc |
97374 |
T |
|
| Q |
205 |
attctctg |
212 |
Q |
| |
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|||||||| |
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| T |
97373 |
attctctg |
97366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 87859 - 87822
Alignment:
| Q |
24 |
tccttttcattcacagtttgatacaatcgtactatttt |
61 |
Q |
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| T |
87859 |
tccttttcattcacagtttgatacaatcgtactatttt |
87822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 97552 - 97515
Alignment:
| Q |
24 |
tccttttcattcacagtttgatacaatcgtactatttt |
61 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
97552 |
tccttttcattcacagtttgatacaatcgtactatttt |
97515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 186494 - 186606
Alignment:
| Q |
105 |
cagtcatcgctgttctaattccgaattaagctgttgccgggttattaatttctctgttgctgcggtttggaatgggtgtttgttaaattagcttattttc |
204 |
Q |
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||||||||||||||||||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
186494 |
cagtcatcgctgttctaattccgaaataagctgctgctatgttatttatttctctgttgctgcggtttggaatgggtgttcgttaaattagcttattttc |
186593 |
T |
|
| Q |
205 |
attctctgctgct |
217 |
Q |
| |
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|||||||| |||| |
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|
| T |
186594 |
attctctgttgct |
186606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 186415 - 186452
Alignment:
| Q |
24 |
tccttttcattcacagtttgatacaatcgtactatttt |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
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| T |
186415 |
tccttttcattcacagtttgatacaatcgtactgtttt |
186452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 18487726 - 18487621
Alignment:
| Q |
105 |
cagtcatcgctgttctaattccgaattaagctgttgccgggttattaatttctctgttgctgcggttt-ggaatgggtgtttgttaaattagcttatttt |
203 |
Q |
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|
||||||| |||||||| ||||| |||||||||| || | || || ||||||||||||||||||||| |||||||||||| |||||| || |||||||| |
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| T |
18487726 |
cagtcattgctgttcttattccaaattaagctgcggctgtattgtttatttctctgttgctgcggttttggaatgggtgttcgttaaactaccttatttt |
18487627 |
T |
|
| Q |
204 |
cattct |
209 |
Q |
| |
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|||||| |
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| T |
18487626 |
cattct |
18487621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 18477630 - 18477525
Alignment:
| Q |
105 |
cagtcatcgctgttctaattccgaattaagctgttgccgggttattaatttctctgttgctgcggttt-ggaatgggtgtttgttaaattagcttatttt |
203 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| | | || || ||||||||||||||||||||| |||||||||||| |||||| || ||||||| |
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| T |
18477630 |
cagtcattgctgttcttattccgaattaagctgcgactgtattgtttatttctctgttgctgcggttttggaatgggtgttcgttaaactacgttatttt |
18477531 |
T |
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| Q |
204 |
cattct |
209 |
Q |
| |
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|||||| |
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| T |
18477530 |
cattct |
18477525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 36306 - 36218
Alignment:
| Q |
105 |
cagtcatcgctgttctaattccgaattaagctgttgccgggttattaatttctctgttgctgcggtttggaatgggtgtttgttaaatt |
193 |
Q |
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||||||| | |||||||||||| || ||||||| ||||| |||||| ||||| ||||||||||||||||||| |||||| |||||||| |
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| T |
36306 |
cagtcattgttgttctaattccaaaataagctgctgccgtgttatttatttccttgttgctgcggtttggaattggtgttcgttaaatt |
36218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 28584 - 28496
Alignment:
| Q |
105 |
cagtcatcgctgttctaattccgaattaagctgttgccgggttattaatttctctgttgctgcggtttggaatgggtgtttgttaaatt |
193 |
Q |
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||||||| | |||||||||||| || |||| || ||||| |||||| ||||| ||||||||||||||||||| |||||| |||||||| |
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| T |
28584 |
cagtcattgttgttctaattccaaaataagttgctgccgtgttatttatttccttgttgctgcggtttggaattggtgttcgttaaatt |
28496 |
T |
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