View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_6 (Length: 580)
Name: NF15126_low_6
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 14 - 562
Target Start/End: Complemental strand, 43713679 - 43713150
Alignment:
| Q |
14 |
agattcttgaagcttttggacgtacattcttggttcttgttttgcagttatgttcttgatgcttttgtcattgcacccattctttgtaagtgatgaaggg |
113 |
Q |
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| T |
43713679 |
agattctt-aagcttttggacgtacattcttggttcttgttttgcagttatgttcttgatgcttttgtcattgcacccattctttgtaagtgatgaaggg |
43713581 |
T |
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| Q |
114 |
gattgcatatttatttgaggcatttattggctcggtggtcttagtgtgtttgtgagtctaagagtttgcagtgttgaaatgcctgcgagtttaggaagct |
213 |
Q |
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| T |
43713580 |
gattgcatatttatttgaggcatttattggctcggtggtcttagtgtgtttgtgagtctaagagtttgcagtgttgaaatgcctgcgagtttaggaag-- |
43713483 |
T |
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| Q |
214 |
gaggttcccattgatttcaaatgatgttggattcaggaaactgtggagtttagcggcataacttttctattgattagtgacaatttagaaaagccaacat |
313 |
Q |
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| T |
43713482 |
----------------tcaaatgatgttggattcaggaaactgtggagtttagcggcataacttttctattgattagtgacaatttagaaaagccaacat |
43713399 |
T |
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| Q |
314 |
cctcgtggtactaccaaggccagtgctgatcctggacactaccgaggcctcataatgtgatttcaatgtcatgatgcctgatcggaaattaattgaaaat |
413 |
Q |
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| T |
43713398 |
cctcgtggtactaccaaggccagtgctgatcctggacactaccgaggcctcataatgtgatttcaatgtcatgatgcctgatcggaaattaattgaaaat |
43713299 |
T |
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| Q |
414 |
taaacaatgatattacatataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcaaaaatga |
513 |
Q |
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| T |
43713298 |
taaacaatgatattacatataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcgaaaatga |
43713199 |
T |
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| Q |
514 |
gcatagcgaatggaggaaaatcgagagaggggagggatgaggtgtggtt |
562 |
Q |
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| T |
43713198 |
gcatagcgaatggaggaaaatcgagagaggggagggatgaggtgtggtt |
43713150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 52894095 - 52894351
Alignment:
| Q |
11 |
cacagattcttgaagcttttggacgtacattcttggttcttgttttgcagttatgttcttgatgcttttgtcattgcacccattctttgtaagtgatgaa |
110 |
Q |
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| T |
52894095 |
cacagattctt-aagcttttggatgtacattgttggttcttgttttgctgttaagttctcga-gcttttgtccttgcacccattctctgtaagagatgaa |
52894192 |
T |
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| Q |
111 |
ggggattgcatatttatttgaggcatttatt-ggctcggtggtcttagtgtgtttgtgagtctaagagtttgcagtgttgaaatgcctgcgagtttagga |
209 |
Q |
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| T |
52894193 |
gagggttgcatatttatttcaggcatttatttggctcagtgatcaaagttggtctatgggtctaagagtttgcagttttgaaatgcctgcgagtttagta |
52894292 |
T |
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| Q |
210 |
agctgaggttcccattgatttcaaatgatgttggattcaggaaactgtggagtttagcg |
268 |
Q |
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| T |
52894293 |
tgccgaggttcccattgatttcagaggatgttggattcaggaaactgtggagtttagcg |
52894351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 42572532 - 42572471
Alignment:
| Q |
375 |
ttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatgatattacatataat |
436 |
Q |
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| T |
42572532 |
ttcaatgtcatgatacctgatcagaaattaattgaaaattaaaccgtgatgttacatataat |
42572471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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