View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15126_low_7 (Length: 548)
Name: NF15126_low_7
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 261 - 534
Target Start/End: Original strand, 24125247 - 24125520
Alignment:
| Q |
261 |
ataagcaacctaactgaaaagaacatttgaaaactttcaaaataagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagag |
360 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24125247 |
ataagcaatctaactgaaaagaacatttggaaactttcaaaataagaaaagtgaacactcccgggtggggttgacaaaaactaggtccttgtttccaggg |
24125346 |
T |
|
| Q |
361 |
atagtctgacctagactcaccccccatcgccctactctattagctccaatataaaatcaaggccaatttccactcgtaataggtacatgatgtatgannn |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24125347 |
atagtctgacctagactcaccccccatcgccctactctattagctccaatataaaatcaaggccaatttccactcataataggtacatgatgtatgattt |
24125446 |
T |
|
| Q |
461 |
nnnncttcaacggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtcccatagagagca |
534 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24125447 |
ttttcttcaacggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtcctatagagagca |
24125520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 24124344 - 24124471
Alignment:
| Q |
19 |
aacgatatctttgatttaacgtcatccacctgttccaataagtatcgagaaaataaaagaaagattattcaata-aaccaacaccatccgtagccatgca |
117 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24124344 |
aacgatatccttgattcaacatcatccacctgtttcaataagtattgagaaaataaaagaaagattattcaatataaccaacaccatccgtagccatgca |
24124443 |
T |
|
| Q |
118 |
taaattgcataccaaactgtgaagataa |
145 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
24124444 |
taaattgcataccaaactgtgaagataa |
24124471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 24124489 - 24124546
Alignment:
| Q |
182 |
aatagaaaatta---tatatataaaacaaagaagagatatgatacaagagtcgccaaa |
236 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24124489 |
aatagaaaattattatatatataaaacaaagaagagatacgatacaagagtcgccaaa |
24124546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 45163912 - 45163767
Alignment:
| Q |
22 |
gatatctttgatttaacgtcatccacctgttccaataagtatcgagaaaataaaagaaagattattcaata-aaccaacaccatccgtagccatgcataa |
120 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| |||| ||||||||||||||||| | |||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
45163912 |
gatatccttgattcaacgtcatccacctgttccactaagcatcgagaaaataaaagacaagttattcaatataaccaacacaatccctagccatgcataa |
45163813 |
T |
|
| Q |
121 |
attgcataccaaactgtgaagataagcccacaaagaacaaaacatgtg |
168 |
Q |
| |
|
||||||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
45163812 |
attgcatac--aatgaagataataagcccacaaagaacaaaacatgtg |
45163767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 45163435 - 45163326
Alignment:
| Q |
261 |
ataagcaacctaactgaaaagaacatttgaaaactttcaaaataagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagag |
360 |
Q |
| |
|
||||||| | ||| ||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||| ||||||||| || ||| | |
|
|
| T |
45163435 |
ataagcagcgtaattgaaaagaa-atttgaaaactttcaaaataagtaaagtgaacactcctaggtggggttggcaagaaccaggtccttgctttcaggg |
45163337 |
T |
|
| Q |
361 |
atagtctgacc |
371 |
Q |
| |
|
||||| ||||| |
|
|
| T |
45163336 |
atagtttgacc |
45163326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 45163287 - 45163235
Alignment:
| Q |
472 |
ggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtccca |
525 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
45163287 |
ggaaccattttcagaaagaagaacaagtggaaagttgatt-cacatgtgtccca |
45163235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University