View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_9 (Length: 487)
Name: NF15126_low_9
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Original strand, 38577495 - 38577944
Alignment:
| Q |
17 |
cacagactaatatgtttgaacactggttcattttcactttgtgcacgaactttctttgtttttattttaatcttacctttaagtaagaaaatataagtta |
116 |
Q |
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| T |
38577495 |
cacagactaatatgtttgaacactggttcattttcactttgtgcacgaactttctttgtttttattttaatcttacctttaagtaagaaaatataagtta |
38577594 |
T |
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| Q |
117 |
aaaagatacagtcagtcttaaatcaaagttactacttactattattagattaagaacaaccaatcatcctgaaaacaccaaaatcacagtggactagaaa |
216 |
Q |
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| T |
38577595 |
aaaatatacagttagtcttaaatcaaagttactacttactattattagattaagaacaaccaatcatcctgaaaacaccaaaatcacagtggactagaaa |
38577694 |
T |
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| Q |
217 |
ttacagatacagtaggtaagctctaaactaagaatgccagttgcccgttgcttaagcaaattttactaatcaatcatatggaatcaaatttgcagccaaa |
316 |
Q |
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| T |
38577695 |
ttacagatacagtaggtaagctctaaactaagaatgccagttgcccgttgattaagcaaattttaccaatcaatcatat-gaatcaaatttgcagccaaa |
38577793 |
T |
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| Q |
317 |
cacatacacttgaaggttttagggttgctatcatgacaataaaaatggaatgatnnnnnnnnncgagaactctcttttattcatttggctggccaatgac |
416 |
Q |
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| T |
38577794 |
cacatacacttgaaggttttagggttgctttaatgacaataaaaatggaatgataaaaaaaaacgagaactctcttttattcatttggctggccaatgac |
38577893 |
T |
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| Q |
417 |
gaattaaggaaattccacaccttatatttcagcaaactgccgcataaggatt |
468 |
Q |
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| T |
38577894 |
gaattaaggaaattccacaccttatatttca-ccaaccgccgcataaggatt |
38577944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 89 - 345
Target Start/End: Original strand, 38590509 - 38590757
Alignment:
| Q |
89 |
ttacctttaagtaagaaaatataagttaaaaagatacagtcagtcttaaatcaaagttactacttactattattagattaagaacaa-ccaatcatcctg |
187 |
Q |
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| T |
38590509 |
ttacctttaattaaaaaaatataagttaaaaagttacagtcagttttaaatcaaagtta---------atttttagattaagaacaaaccaatcatcctg |
38590599 |
T |
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| Q |
188 |
aaaacaccaaaatcacagtggactagaaattacagatacagtaggtaagctctaaactaagaatgccagttgcccgttgcttaagcaaattttactaatc |
287 |
Q |
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| T |
38590600 |
aaaacgccaaaatcacaatggactagaaattacatatatagtaggtgagctctaaactcagagtgccagttgcctgtcgcttaagcaaattttactaatc |
38590699 |
T |
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| Q |
288 |
aatcatatggaatcaaatttgcagccaaacacatacacttgaaggttttagggttgct |
345 |
Q |
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| T |
38590700 |
aattatatggaatcaaatttgcagccaaacacatacacttcaaggttttagggttgct |
38590757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 381 - 465
Target Start/End: Original strand, 38590815 - 38590899
Alignment:
| Q |
381 |
gagaactctcttttattcatttggctggccaatgacgaattaaggaaattccacaccttatatttcagcaaactgccgcataagg |
465 |
Q |
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||||||| | ||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
38590815 |
gagaactttgttttattcatttggctggccaatgatgaatcaaggaaattccacacctaatatttcagcaagctgctgcataagg |
38590899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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