View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15127_high_1_N (Length: 360)

Name: NF15127_high_1_N
Description: NF15127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15127_high_1_N
NF15127_high_1_N
[»] chr5 (7 HSPs)
chr5 (9-359)||(37704683-37705034)
chr5 (224-359)||(37699208-37699349)
chr5 (284-359)||(37437748-37437823)
chr5 (9-98)||(34599459-34599550)
chr5 (124-166)||(30384256-30384298)
chr5 (129-165)||(1630012-1630048)
chr5 (24-63)||(29531935-29531975)
[»] chr4 (5 HSPs)
chr4 (224-359)||(16840857-16841002)
chr4 (9-104)||(22519386-22519483)
chr4 (124-164)||(31095092-31095132)
chr4 (9-104)||(31095124-31095221)
chr4 (40-104)||(49291270-49291335)
[»] chr6 (5 HSPs)
chr6 (122-164)||(17411089-17411131)
chr6 (11-70)||(32548174-32548234)
chr6 (122-165)||(196244-196287)
chr6 (9-62)||(7202365-7202419)
chr6 (9-89)||(16419755-16419837)
[»] chr2 (1 HSPs)
chr2 (9-89)||(4558769-4558851)
[»] chr8 (1 HSPs)
chr8 (119-164)||(18080600-18080645)
[»] chr3 (2 HSPs)
chr3 (9-92)||(30534581-30534666)
chr3 (122-165)||(44291420-44291463)
[»] chr1 (3 HSPs)
chr1 (11-63)||(47726484-47726537)
chr1 (11-63)||(47747790-47747843)
chr1 (11-63)||(29954922-29954975)
[»] chr7 (4 HSPs)
chr7 (11-63)||(12422262-12422315)
chr7 (127-165)||(12422352-12422390)
chr7 (40-89)||(48447315-48447365)
chr7 (122-154)||(32857805-32857837)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 359
Target Start/End: Complemental strand, 37705034 - 37704683
Alignment:
Q  9 agatcttaaaactgcaagttattcgggacctaaagttacaattaaataacttaaacgaccta-gtgttatgaaaaatacttacataactaacttgttttt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  37705034 agatcttaaaactgcaagttattcgggacctaaagttacaattaaataacttaaacgacctaagtgttacgaaaaatacttacataactaacttgttttt 37704935  T
Q  108 tgagcaactacataactaacttgttataattaaataacttaaatgacgtaagtgatacgnnnnnnnnnnnnnnnnccgatttgttataattaaataactt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||                |||||||||||||||||||||||||    
T  37704934 tgagcaactacataactaacttgttataattaaataacttaaatgacgcaagtgatacgaaaaaatcttaaaaaaccgatttgttataattaaataactt 37704835  T
Q  208 aaaagtatcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgttattttcttcatttcaggtgtat 307  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704834 aaaagtctcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgttattttcttcatttcaggtgtat 37704735  T
Q  308 ttttaagcacattactcactgtgattgctacttaaatgaatttgttatctta 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704734 ttttaagcacattactcactgtgattgctacttaaatgaatttgttatctta 37704683  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 224 - 359
Target Start/End: Complemental strand, 37699349 - 37699208
Alignment:
Q  224 gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtatttttaagcac 317  Q
    |||||||||||| ||| || ||||||||||||||||||||| | ||||||||||||||||||      ||||||||||||| |||||||||||||||||     
T  37699349 gctctttaaagtctgttcagttgaagaagtctaagtctccgttgctaaatacaattaatgttgttattattttcttcattttaggtgtatttttaagcaa 37699250  T
Q  318 attactcactgtgattgctacttaaatgaatttgttatctta 359  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  37699249 attactcattctgattgctacttaaatgaatttgttatctta 37699208  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 284 - 359
Target Start/End: Complemental strand, 37437823 - 37437748
Alignment:
Q  284 ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatctta 359  Q
    ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  37437823 ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatctta 37437748  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 34599550 - 34599459
Alignment:
Q  9 agatcttaaaactgcaagttattcgggacct-aaagttacaattaaataacttaaacgacct-agtgttatgaaaaatacttacataactaa 98  Q
    ||||||||||| || ||||||||| |||||| ||||||||||||||| |||||||| ||| | ||  ||| |||||||||||| ||||||||    
T  34599550 agatcttaaaaatgtaagttattctggacctaaaagttacaattaaacaacttaaaggacttaagcattaagaaaaatacttaaataactaa 34599459  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 30384298 - 30384256
Alignment:
Q  124 taacttgttataattaaataacttaaatgacgtaagtgatacg 166  Q
    |||||||||| |||||||||||||||| ||||||||| |||||    
T  30384298 taacttgttacaattaaataacttaaaagacgtaagtaatacg 30384256  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 1630012 - 1630048
Alignment:
Q  129 tgttataattaaataacttaaatgacgtaagtgatac 165  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  1630012 tgttatgattaaataacttaaaagacgtaagtgatac 1630048  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 29531975 - 29531935
Alignment:
Q  24 aagttattcgggacctaaag-ttacaattaaataacttaaa 63  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  29531975 aagttattcgggacctaaaaattacaattaaataacttaaa 29531935  T

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Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 224 - 359
Target Start/End: Original strand, 16840857 - 16841002
Alignment:
Q  224 gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtat----ttttaa 313  Q
    ||||||||||||||| | | |||| |||||||||||||||| ||||||||||| ||||||||      ||||||||||||||||||||||    ||||||    
T  16840857 gctctttaaagtatggatagttgacgaagtctaagtctccgcttctaaatacatttaatgttgttattattttcttcatttcaggtgtatatatttttaa 16840956  T
Q  314 gcacattactcactgtgattgctacttaaatgaatttgttatctta 359  Q
    ||| |||| ||| |||||||| ||||||||||||||||||||||||    
T  16840957 gcaaattattcattgtgattggtacttaaatgaatttgttatctta 16841002  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 22519483 - 22519386
Alignment:
Q  9 agatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacct-agtgttatgaaaaatacttacataactaacttgtt 104  Q
    ||||||||||| || |||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||| |  |||||||||||    
T  22519483 agatcttaaaaatgtaagttatttgggacctaaaagttacaattaaataacttaaaggacctaagtgttacgaaaaatacttaaaggactaacttgtt 22519386  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 31095132 - 31095092
Alignment:
Q  124 taacttgttataattaaataacttaaatgacgtaagtgata 164  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  31095132 taacttgttataattaaataacttaaaggacgtaagtgata 31095092  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 31095221 - 31095124
Alignment:
Q  9 agatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacct-agtgttatgaaaaatacttacataactaacttgtt 104  Q
    ||||||||||| || |||||||||  |||||||| |||||||||||||||||||||  |||| |||||||  || |||||||| || | |||||||||    
T  31095221 agatcttaaaaatgtaagttattcaagacctaaaagttacaattaaataacttaaagaacctaagtgttacaaacaatacttaaatgattaacttgtt 31095124  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 49291270 - 49291335
Alignment:
Q  40 aaagttacaattaaataacttaaacgacct-agtgttatgaaaaatacttacataactaacttgtt 104  Q
    |||||||||||||||||||||||| ||| | | |||||| ||||||||||| || |||||||||||    
T  49291270 aaagttacaattaaataacttaaaagacttaaatgttataaaaaatacttaaatgactaacttgtt 49291335  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 17411131 - 17411089
Alignment:
Q  122 actaacttgttataattaaataacttaaatgacgtaagtgata 164  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  17411131 actaacttgttacaattaaataacttaaatgacgtaagtgata 17411089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 32548174 - 32548234
Alignment:
Q  11 atcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgaccta 70  Q
    ||||||||| || ||| ||||||||| ||||| ||||||||||||||||||||| ||||||    
T  32548174 atcttaaaaatgtaagctattcgggatctaaaagttacaattaaataacttaaaggaccta 32548234  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 196244 - 196287
Alignment:
Q  122 actaacttgttataattaaataacttaaatgacgtaagtgatac 165  Q
    ||||| || ||| |||||||||||||||||||||||||||||||    
T  196244 actaaattattacaattaaataacttaaatgacgtaagtgatac 196287  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 7202365 - 7202419
Alignment:
Q  9 agatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaa 62  Q
    ||||||||||| |  |||||||||||| |||||| ||||||||||||||||||||    
T  7202365 agatcttaaaaatttaagttattcggggcctaaaagttacaattaaataacttaa 7202419  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 16419755 - 16419837
Alignment:
Q  9 agatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacct-agtgttatgaaaaatactta 89  Q
    |||||||| || || |||||||| ||| |||||| ||| ||||||||||||||||| ||||| ||||||| || |||||||||    
T  16419755 agatcttagaaatgtaagttatttggggcctaaaagtttcaattaaataacttaaaagacctaagtgttacgacaaatactta 16419837  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 4558851 - 4558769
Alignment:
Q  9 agatcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaacgacct-agtgttatgaaaaatactta 89  Q
    ||||||||||| ||||||||||||  | |||||| ||||||||||||||| ||||| ||||| ||||||| ||||||||||||    
T  4558851 agatcttaaaaatgcaagttattcatggcctaaaagttacaattaaataaattaaaagacctaagtgttacgaaaaatactta 4558769  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 18080645 - 18080600
Alignment:
Q  119 ataactaacttgttataattaaataacttaaatgacgtaagtgata 164  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18080645 ataactaacttattacaattaaataacttaaatgacgtaagtgata 18080600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 30534581 - 30534666
Alignment:
Q  9 agatcttaaaactgcaagttattcgggaccta-aagttacaattaaataacttaaacgacct-agtgttatgaaaaatacttacat 92  Q
    ||||||||||| || |||||||| ||| |||| ||||||||||||||||| ||||| ||||| ||| ||| |||||||||||||||    
T  30534581 agatcttaaaaatgtaagttatttggggcctacaagttacaattaaataatttaaaagacctaagtcttacgaaaaatacttacat 30534666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 44291420 - 44291463
Alignment:
Q  122 actaacttgttataattaaataacttaaatgacgtaagtgatac 165  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||    
T  44291420 actaacttgttacaattaaataacttaaaggacataagtgatac 44291463  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 47726537 - 47726484
Alignment:
Q  11 atcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaa 63  Q
    ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||    
T  47726537 atcttaaaaatgcaagttattcgggatctaaaagttacaattaaataacttaaa 47726484  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 47747843 - 47747790
Alignment:
Q  11 atcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaa 63  Q
    ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||    
T  47747843 atcttaaaaatgcaagttattcgggatctaaaagttacaattaaataacttaaa 47747790  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 29954922 - 29954975
Alignment:
Q  11 atcttaaaactgcaagttattc-gggacctaaagttacaattaaataacttaaa 63  Q
    ||||||||| || ||||||||| |||||  ||||||||||||||||||||||||    
T  29954922 atcttaaaaatgtaagttattctgggactaaaagttacaattaaataacttaaa 29954975  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 12422262 - 12422315
Alignment:
Q  11 atcttaaaactgcaagttattcgggacctaaa-gttacaattaaataacttaaa 63  Q
    ||||||||| |  ||||||||||||||||||| |||||||||||||||||||||    
T  12422262 atcttaaaagtataagttattcgggacctaaaagttacaattaaataacttaaa 12422315  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 12422352 - 12422390
Alignment:
Q  127 cttgttataattaaataacttaaatgacgtaagtgatac 165  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgatac 12422390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 48447365 - 48447315
Alignment:
Q  40 aaagttacaattaaataacttaaacgacct-agtgttatgaaaaatactta 89  Q
    |||||||||||||||||||||||| ||||| || |||| ||||||||||||    
T  48447365 aaagttacaattaaataacttaaaggacctaagcgttacgaaaaatactta 48447315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 32857837 - 32857805
Alignment:
Q  122 actaacttgttataattaaataacttaaatgac 154  Q
    |||||||||||| ||||||||||||||||||||    
T  32857837 actaacttgttacaattaaataacttaaatgac 32857805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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