View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15127_high_2 (Length: 357)

Name: NF15127_high_2
Description: NF15127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15127_high_2
NF15127_high_2
[»] scaffold0003 (2 HSPs)
scaffold0003 (8-235)||(41944-42171)
scaffold0003 (8-235)||(35274-35501)
[»] chr6 (4 HSPs)
chr6 (8-235)||(27445187-27445414)
chr6 (8-226)||(20909590-20909808)
chr6 (8-226)||(20924038-20924256)
chr6 (8-65)||(22081881-22081938)
[»] chr8 (2 HSPs)
chr8 (8-226)||(42312704-42312922)
chr8 (8-61)||(43227254-43227307)
[»] chr4 (3 HSPs)
chr4 (234-330)||(37618466-37618559)
chr4 (24-61)||(30180301-30180338)
chr4 (8-65)||(37618034-37618091)
[»] chr1 (1 HSPs)
chr1 (8-226)||(41326488-41326702)
[»] chr7 (2 HSPs)
chr7 (8-226)||(11504544-11504770)
chr7 (8-122)||(18939752-18939865)


Alignment Details
Target: scaffold0003 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 42171 - 41944
Alignment:
Q  8 cataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttat 107  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |||||||||||| |||| |||||| |||||||||    
T  42171 cataggatgaagcaatagttttagaatcaaatgttgattgacaggaagatatatttattgtcgaagatgtctaacttgctgcccctgtgtttgttgttat 42072  T
Q  108 gttatattactttattagattctatgatggattatttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgct 207  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||    
T  42071 gttatattactttattagattctatgatcgattatttccttcattctttatggttaaatctgcaatttttgtttgaggattccaaaatatcatgtttgct 41972  T
Q  208 cctatgcgcaataagaattctgctaatt 235  Q
    ||||||| ||||||||||||||||||||    
T  41971 cctatgcacaataagaattctgctaatt 41944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 35501 - 35274
Alignment:
Q  8 cataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttat 107  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |||||||||||| |||| |||||| |||||||||    
T  35501 cataggatgaagcaatagttttagaatcaaatgttgattgacaggaagatatatttattgtcgaagatgtctaacttgctgcccctgtgtttgttgttat 35402  T
Q  108 gttatattactttattagattctatgatggattatttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgct 207  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| || |||    
T  35401 gttatattactttattatattctatgatcgattatttccttcattctttatggttaaatctgcaatttctgtttgaggattccaaaatatcatgtttgct 35302  T
Q  208 cctatgcgcaataagaattctgctaatt 235  Q
    ||||||| ||||||||||||||||||||    
T  35301 cctatgcacaataagaattctgctaatt 35274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 27445187 - 27445414
Alignment:
Q  8 cataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttat 107  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |||||||||||| |||| |||||| |||||||||    
T  27445187 cataggatgaagcaatagttttagaatcaaatgttgattgacaggaagatatatttattgtcgaagatgtctaacttgctgcccctgtgtttgttgttat 27445286  T
Q  108 gttatattactttattagattctatgatggattatttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgct 207  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||    
T  27445287 gttatattactttattagattctatgatcgattatttccttcattctttatggttaaatctgcaatttttgtttgaggattccaaaatatcatgtttgct 27445386  T
Q  208 cctatgcgcaataagaattctgctaatt 235  Q
    ||||||| ||||||||||||||||||||    
T  27445387 cctatgcacaataagaattctgctaatt 27445414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 20909808 - 20909590
Alignment:
Q  8 cataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttat 107  Q
    |||| |||||||||| |||||||||||||| ||||||| ||||||||||| ||| |||  | ||| | |||| |||||||||| |||||| | |||||||    
T  20909808 catatgatgaagcaagagttttagaatcaagtgttgttcgacaggaagatctctctgtaatagaagacgtcttacttgatgccactgtgtttattgttat 20909709  T
Q  108 gttatattactttattagattctatgatggatta-tttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgc 206  Q
    ||||||||||||||| | ||||||||||  |||| ||||||| | | | ||| || |||||||| || ||| ||||| |||||||||| ||||| || ||    
T  20909708 gttatattactttatcatattctatgattaattattttccttatatatgtatagtaaaatctgc-atctttatttgatgattccaaaacatcatatttgc 20909610  T
Q  207 tcctatgcgcaataagaatt 226  Q
    |||||||| |||||||||||    
T  20909609 tcctatgcacaataagaatt 20909590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 20924256 - 20924038
Alignment:
Q  8 cataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttat 107  Q
    |||| |||||||||| |||||||||||||| ||||||| ||||||||||| ||| |||  | ||| | |||| |||||||||| |||||| | |||||||    
T  20924256 catatgatgaagcaagagttttagaatcaagtgttgttcgacaggaagatctctctgtaatagaagacgtcttacttgatgccactgtgtttattgttat 20924157  T
Q  108 gttatattactttattagattctatgatggatta-tttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgc 206  Q
    ||||||||||||||| | ||||||||||  |||| ||||||| | | | ||| || |||||||| || ||| ||||| |||||||||| ||||| || ||    
T  20924156 gttatattactttatcatattctatgattaattattttccttatatatgtatagtaaaatctgc-atctttatttgatgattccaaaacatcatatttgc 20924058  T
Q  207 tcctatgcgcaataagaatt 226  Q
    |||||||| |||||||||||    
T  20924057 tcctatgcacaataagaatt 20924038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 22081881 - 22081938
Alignment:
Q  8 cataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgt 65  Q
    |||||||||||| |  ||||||||||||||  ||||||||||| |||| |||||||||    
T  22081881 cataggatgaagtaggagttttagaatcaagcgttgtttgacatgaagttatctttgt 22081938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 42312922 - 42312704
Alignment:
Q  8 cataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttat 107  Q
    |||| |||||||||| ||| |||||||||| ||||||| ||||||||||| ||| |||  ||||| | |||| |||||||||| ||||||   |||||||    
T  42312922 catacgatgaagcaagagtattagaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacgtcttacttgatgccactgtgttcattgttat 42312823  T
Q  108 gttatattactttattagattctatgatggatta-tttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgc 206  Q
     |||||||||||||| | ||||||||||  |||| ||||||| | | | ||| ||||||||||| || ||| ||||| |||||||||| ||||  || ||    
T  42312822 tttatattactttatcatattctatgattaattattttccttatatatgtatagttaaatctgc-atctttatttgatgattccaaaacatcacgtttgc 42312724  T
Q  207 tcctatgcgcaataagaatt 226  Q
    |||||||| |||||||||||    
T  42312723 tcctatgcacaataagaatt 42312704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 43227254 - 43227307
Alignment:
Q  8 cataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatct 61  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||||||||||||    
T  43227254 cataggatgaagcaagagttttagaatcaagtgttctttgacaggaagatatct 43227307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 37618559 - 37618466
Alignment:
Q  234 ttcaccaggttctctggattcgtagtggttcatcgctgtaatcagattcctcctctgtgcacatctgtatttggttaaggattatttgggctatgtg 330  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |   ||||| |||||||||||| ||||||||||||||||||||||||||||    
T  37618559 ttcaccaggttctctggattcgtagtggtacatcgctgtaatcaggt---tcctcggtgcacatctgtgtttggttaaggattatttgggctatgtg 37618466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 30180301 - 30180338
Alignment:
Q  24 agttttagaatcaaatgttgtttgacaggaagatatct 61  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  30180301 agttttagaatcaattgttgtttgacaagaagatatct 30180338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 37618091 - 37618034
Alignment:
Q  8 cataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgt 65  Q
    |||||||||||| |  ||||||||||||||  ||||||||||| |||| |||||||||    
T  37618091 cataggatgaagaaggagttttagaatcaagcgttgtttgacatgaagttatctttgt 37618034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 41326702 - 41326488
Alignment:
Q  8 cataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttat 107  Q
    |||| |||||||||| |||||||||||||| | ||||| ||||||||||| ||| |||  ||||| | |||| |||||||||| |||||| | |||||||    
T  41326702 catatgatgaagcaagagttttagaatcaagttttgttcgacaggaagatctctctgtaatcgaagacgtcttacttgatgccactgtgtttattgttat 41326603  T
Q  108 gttatattactttattagattctatgatggatta-tttccttctttctttattgttaaatctgcaatttttgtttgaggattccaaaatatcattttcgc 206  Q
    ||||||||||||||| | ||||||||||  |||| ||||||| | | | ||| |  |||||||| || ||| ||||| |||||||||| ||||||   ||    
T  41326602 gttatattactttatcatattctatgattaattattttccttatatatgtatag-aaaatctgc-atctttatttgatgattccaaaacatcatt---gc 41326508  T
Q  207 tcctatgcgcaataagaatt 226  Q
    |||||||| |||||||||||    
T  41326507 tcctatgcacaataagaatt 41326488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 11504544 - 11504770
Alignment:
Q  8 cataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtg--------tct 99  Q
    |||| |||||||||| |||||||||||||| |||||||||||| ||||||||||||||  ||||| | |||| |||||||||| ||| |        | |    
T  11504544 catatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaatcgaagacgtctcacttgatgccactgcgtttattgtttt 11504643  T
Q  100 gttgttatgttatattactttattagattctatgatggattatttccttct-ttctttattgttaaatctgcaatttttgtttgaggattccaaaatatc 198  Q
     ||||||||||| |||||||||| | ||||| ||||  ||||||||||| | || ||||| |||||||||||||| | | ||||| ||||| |||| ||     
T  11504644 attgttatgttagattactttatcatattct-tgattaattatttccttatattttttatagttaaatctgcaatctgtttttgatgattctaaaacatt 11504742  T
Q  199 attttcgctcctatgcgcaataagaatt 226  Q
    || ||  ||||||||| |||||||||||    
T  11504743 atgtttactcctatgcacaataagaatt 11504770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 18939865 - 18939752
Alignment:
Q  8 cataggatgaagcaatagttttagaatcaaatgttgtttgacaggaagatatctttgttgtcgaatatgtctaacttgatgcctctgtgtctgttgttat 107  Q
    |||| |||||| ||| |||||||||||||| |||||||||  ||||||||||||||  | ||||| | |||| | |||||||  |||||| | |||||||    
T  18939865 catatgatgaatcaagagttttagaatcaagtgttgtttggaaggaagatatcttt-atatcgaagacgtcttaattgatgcaactgtgtttattgttat 18939767  T
Q  108 gttatattactttat 122  Q
    |||| | ||||||||    
T  18939766 gttagaatactttat 18939752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University