View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15127_low_1 (Length: 347)
Name: NF15127_low_1
Description: NF15127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15127_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 2233913 - 2233684
Alignment:
| Q |
1 |
ttaatcagatgagtcaaaaactctaaactctagtttcatgttacaatcaattttagaggcaaaagctctaaattctagctttaggctagaattgatccta |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2233913 |
ttaatcagatgagtcaaaaactctaaactctagcttcatgttacaatcaattttagaggcaaaagctctaaattctagctttaggctagaattgatccta |
2233814 |
T |
|
| Q |
101 |
gaaacaaaatcaattttccttgagaacattcaataatatcaaaaatcaattctacaactctagaatcaattaactcatcataaagtgaaaccaaacatgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2233813 |
gaaacaaaatcaattttccttgagaacattcaataatatcaaaaatcaattctacaactctagaatcaattaactcatcttaaagtgaaaccaaacatgc |
2233714 |
T |
|
| Q |
201 |
accaaattattatt-ttttgaagagaaaca |
229 |
Q |
| |
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|||||||||||||| ||||||||||||||| |
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| T |
2233713 |
accaaattattatttttttgaagagaaaca |
2233684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 2233626 - 2233548
Alignment:
| Q |
223 |
agaaacaaacaaaaaatcaaattttgacacaaacccattttcatttcaatcaaacacatgccatttcccaatagccagc |
301 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2233626 |
agaaacaaacaaaaaatcaaattttgacacaaacccattttcatttcaatcaaacacatgccatttcccaatagccagc |
2233548 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 2233492 - 2233445
Alignment:
| Q |
233 |
aaaaaatcaaattttgacacaaacccattttcatttcaatcaaacaca |
280 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
2233492 |
aaaatatcaaattttgacacaaacccatttgcatttcaatcaaacaca |
2233445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 35995182 - 35995153
Alignment:
| Q |
142 |
aaaatcaattctacaactctagaatcaatt |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
35995182 |
aaaatcaattctacaactctagaatcaatt |
35995153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 51093307 - 51093271
Alignment:
| Q |
45 |
aatcaattttagaggcaaaagctctaaattctagctt |
81 |
Q |
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|||||||| ||||||||||||||| |||||||||||| |
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| T |
51093307 |
aatcaattgtagaggcaaaagctccaaattctagctt |
51093271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 45369212 - 45369087
Alignment:
| Q |
45 |
aatcaattttagaggcaaaagctctaaattctagctttaggctagaattgatcctagaaacaaaatcaattttccttgagaacattcaataatatcaaaa |
144 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | | || ||| || |||||| ||||||||||| | ||||||||||| ||| || || ||| |
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| T |
45369212 |
aatcaattttagaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctc-aaa |
45369114 |
T |
|
| Q |
145 |
atcaattctacaactctagaatcaatt |
171 |
Q |
| |
|
||||| |||||| |||| |||||||| |
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|
| T |
45369113 |
atcaaatctacacctctgaaatcaatt |
45369087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 42423225 - 42423259
Alignment:
| Q |
47 |
tcaattttagaggcaaaagctctaaattctagctt |
81 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |
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|
| T |
42423225 |
tcaattttagagacaaaagctctaaattctagctt |
42423259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 24974249 - 24974201
Alignment:
| Q |
16 |
aaaaactctaaactctagtttcatgttacaatcaattttagaggcaaaa |
64 |
Q |
| |
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|||||||||||| ||| | ||||||||| |||||||||| ||||||||| |
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| T |
24974249 |
aaaaactctaaattctcgcttcatgttagaatcaattttggaggcaaaa |
24974201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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