View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15128_low_1 (Length: 515)
Name: NF15128_low_1
Description: NF15128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15128_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 13861373 - 13861193
Alignment:
| Q |
8 |
aagaatatcagcagagattatagaaaatgtgtgggttcttcaatacacacctcctctgagttaaaaatagcatgtttagcgagcatatgagcaatataat |
107 |
Q |
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| T |
13861373 |
aagaaaatcagcagagattatagaaaatgtgtgggttcttcaatacacacctc---tgggttaaaaatagcatgtttagcgagcatatgagcaatataat |
13861277 |
T |
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| Q |
108 |
ttctattacgact-agtgtgagtaaacaaaataagagaaatactgannnnnnnnagaggaagagaaatatttatataatcacaac |
191 |
Q |
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| T |
13861276 |
ttctattacgactaagtgtgagtaaacaaaatacgagaaatactga-tttttttagaggaagagaaatatttatataatcacaac |
13861193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 322 - 501
Target Start/End: Complemental strand, 13861061 - 13860882
Alignment:
| Q |
322 |
cttgtgatcaaacaagtatatctcacaagagaaatctaaagctaaactcaactttttccaacaattttcaagaatgagagatatttctacgaaatgnnnn |
421 |
Q |
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| T |
13861061 |
cttgtgatgaaacaagtatatctcacaagagaaatctaaagctaaactcaactttttccaacaatgttcaagaatgagagatatttctacgaaaggtctt |
13860962 |
T |
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| Q |
422 |
nnnnnnnnnnnnnnnnnnnnacattcctaagcaagttggttcacaatcaagctcaaggatgcaatcaatacaacaaattt |
501 |
Q |
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| T |
13860961 |
tttttctttctttcttttctacatttctaagcaagttggttcacaatcaagctcaaggatgcaatcaatacaacaaattt |
13860882 |
T |
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