View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15128_low_3 (Length: 350)
Name: NF15128_low_3
Description: NF15128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15128_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 6360401 - 6360057
Alignment:
| Q |
1 |
caatcacaatgactcaccgtgttctactaccttcaccgtcaatccatacatgcattttatataatatcaaagaacacgatgcgaacatgattattatcgc |
100 |
Q |
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| T |
6360401 |
caatcacaatgactcaccgtgttctactaccttcaccgtcaatccatacatgtattttatataatatcaaagatcgcgatgcgaacatgattattatggc |
6360302 |
T |
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| Q |
101 |
gactgtcaattttaaaattcgttagaatatattaattaaaaccaatagaaacatcatggttgaatatttccaagtaaattgagatataaccaaatgattt |
200 |
Q |
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| T |
6360301 |
gaccgtcgattttaaaattcgttagaatatattaattaaaaccaatagaaacatcatggttgaatatttccaagtaaattgagatataaccaaatgattt |
6360202 |
T |
|
| Q |
201 |
atacgtaactaaccagaataactgataggaaattccttgagaaatccacatggaacttcaatgctatcatttggatgattaaaataagaaaacctcttaa |
300 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6360201 |
atacgtaactaaccagaatcactgattggaaattccttgagaaatccacatggaacttcaatgctatcatttggatgattaaaataagaaaacctcttaa |
6360102 |
T |
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| Q |
301 |
cattgctgaaattcccaccaaaagtaccaacattgccctgcatat |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6360101 |
cattgctgaaattcccaccaaaagtaccaacattgccctgcatat |
6360057 |
T |
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