View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1512_high_14 (Length: 203)
Name: NF1512_high_14
Description: NF1512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1512_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 20015178 - 20015351
Alignment:
| Q |
14 |
cataggtttccacgtccaactttagacctgaactactaatctccgtcaccaatagagtagcctccgcagttcgattctctttgcagtaagccttcaagat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20015178 |
cataggtttccacgtccaactttagacctgaactactaatctcggtcaccaatagactagcctccgcagttcgattctctttgcagtaagccttcaagat |
20015277 |
T |
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| Q |
114 |
cggcacatagaccccaagacccacagagcctcccaaagcattcatctcatcaagaatactatgcgctttgtctg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20015278 |
cggcacatagaccccaagacccacagagcctcccaaagcattcatctcatcaagaatactatgcgctttgtctg |
20015351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 19701437 - 19701264
Alignment:
| Q |
14 |
cataggtttccacgtccaactttagacctgaactactaatctccgtcaccaatagagtagcctccgcagttcgattctctttgcagtaagccttcaagat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19701437 |
cataggtttccacgtccaactttagacctgaactactaatctcggtcaccaatagactagcctccgcagttcgattctctttgcagtaagccttcaagat |
19701338 |
T |
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| Q |
114 |
cggcacatagaccccaagacccacagagcctcccaaagcattcatctcatcaagaatactatgcgctttgtctg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19701337 |
cggcacatagaccccaagacccacagagcctcccaaagcattcatctcatcaagaatattatgcgctttgtctg |
19701264 |
T |
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