View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1512_high_3 (Length: 374)
Name: NF1512_high_3
Description: NF1512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1512_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 8104662 - 8104324
Alignment:
| Q |
11 |
ataatattaatataactaacaataagcacaatcaaaattaaaccaaggaaactaagaacagttttcaagttacaaaataagttaataaaatttattgttt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8104662 |
ataaaattaatataactaacaataagcacaatcaaaattaaaccaaggaaactaagaacagttttcaagttacaaaataagttaataaaatttattgttt |
8104563 |
T |
|
| Q |
111 |
ataattctggagagaggaggaagagggagtattaattaattaaatcaatgaatacctctatttatcatttactctatttgagtttttgaaacaagtttat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
8104562 |
ataattctggagagaggaggaagagggagtattaattaattaaatcaatgaatacctctatttatcatttactctatttgacttttttaaagaagtttat |
8104463 |
T |
|
| Q |
211 |
tatattctcattttcctttaactagcattttgtattaaagtcaagtcaaaatgtcaaatacaacaaaatagtatctcctactccaacaacaatcaattag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8104462 |
tatattctcattttcctttaactagcattttgtattaaagccaagtcaaaatgtcaaatacaacaaaatagtatctcctactccaacaacaatcaattag |
8104363 |
T |
|
| Q |
311 |
aagcggtagaaaaaccaaaaatcttgaagcatataaata |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8104362 |
aagcggtagaaaaaccaaaaatcttgaagcatataaata |
8104324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 8100500 - 8100540
Alignment:
| Q |
61 |
actaagaacagttttcaagttacaaaataagttaataaaat |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8100500 |
actaagaatggttttcaagttacaaaataagttaataaaat |
8100540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 8100375 - 8100427
Alignment:
| Q |
16 |
attaatataactaacaataagcacaatcaaaat--taaaccaaggaaactaag |
66 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||| |||| |
|
|
| T |
8100375 |
attaatataactaacaataagcacaatgaaaatcaaaaaccaaggaaaataag |
8100427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University