View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1512_high_5 (Length: 272)
Name: NF1512_high_5
Description: NF1512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1512_high_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 31810521 - 31810250
Alignment:
| Q |
1 |
cttcatcaaggaaatcaacatctgcaccagcatcaagcaagagcttaacaatctcaaatttggatttagagccaccagcaacagcacaatgtaatgcagt |
100 |
Q |
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| T |
31810521 |
cttcatcaaggaaatcaacatctgcaccagcatcaagcaagagcttaacaatctcaaatttggatttagagccaccagcaacagcacaatgtaatgcagt |
31810422 |
T |
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| Q |
101 |
gacattttcactaccaattgccatgttcacattaaccatgtttgtttcaatgatatatttgaccaccctaatgcttccaaacaaagaagcaatcataagg |
200 |
Q |
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| T |
31810421 |
gacattttcactaccaattgccatgttcacattaaccatgtttgtttcaatgatatatttgaccaccctaatgcttccaaacaaagaagcaatcataagg |
31810322 |
T |
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| Q |
201 |
ggtgtcctcttttcataacacattttctttgatcctatttttctacagtaccaaaaccctgcctcatttaca |
272 |
Q |
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| T |
31810321 |
ggtgttctcttttcataacacattttctttgatcctatttttctacagtaccaaaaccctgcctcatttaca |
31810250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 25817891 - 25817828
Alignment:
| Q |
172 |
tgcttccaaacaaagaagcaatcataaggggtgtcctcttttcataacacattttctttgatcc |
235 |
Q |
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| T |
25817891 |
tgcttccaaacaaggcagcaatcataagaggggtcctttcttcataactcatttcctttgatcc |
25817828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 35643265 - 35643158
Alignment:
| Q |
161 |
gaccaccctaatgcttccaaacaaagaagcaatcataaggggtgtcctcttttcataacacattttctttgatcctatttttctacagtaccaaaaccct |
260 |
Q |
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| T |
35643265 |
gaccactctagtgcttccaaacatggaagcaatcataagaggagtcctcttttcggattccatcttcttcgatccaattcttctaccataccaaaagcct |
35643166 |
T |
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| Q |
261 |
gcctcatt |
268 |
Q |
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| T |
35643165 |
tcctcatt |
35643158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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