View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1512_high_6 (Length: 254)
Name: NF1512_high_6
Description: NF1512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1512_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 38009585 - 38009821
Alignment:
| Q |
18 |
tacatgactgactaacacattgttgaaaagacgaagagaggaaattgaatggtgtgtaatgtgtattacttgcagaaaagatgattccgggtgagtgaaa |
117 |
Q |
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| T |
38009585 |
tacatgactgactaacacattgttgaaaagacgaagagaggaaattgaatggtgtgtaatgtgtattacttgcagaaaagttgattccgggtgagtgaaa |
38009684 |
T |
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| Q |
118 |
ctacagaatgtagcaaactccaactgtttgaagaatgagaatgcaaagtgaattagcaaaaggaatagcaatagagaaagagggnnnnnnnggataattg |
217 |
Q |
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| T |
38009685 |
ctgcagaatgtagcaaactccaactgtttgaagaatgagaatgcaaagtgaattagcaaaaggaatagcaatagagaaagaggaaaaaaaaggataattg |
38009784 |
T |
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| Q |
218 |
aataggtgattcataccagattggacatttgagttct |
254 |
Q |
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| T |
38009785 |
aataggtgattcataccagattggacatttgagttct |
38009821 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 6019079 - 6019043
Alignment:
| Q |
83 |
ttacttgcagaaaagatgattccgggtgagtgaaact |
119 |
Q |
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| T |
6019079 |
ttacttgcagaaaagatgattgcaggtgagtgaaact |
6019043 |
T |
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