View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1512_low_10 (Length: 249)
Name: NF1512_low_10
Description: NF1512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1512_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34895891 - 34896129
Alignment:
| Q |
1 |
tgttggaggaaatttgattactgcctcgcgcattccctggaaaacttttccgtttttcatctcctccctgagctggtccttttctctaagccaatcaaag |
100 |
Q |
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| T |
34895891 |
tgttggaggaaatttgattactgcctcgcgcattccctggaaaacttttccgtttttcatctcctccctgagctggtccttttctctaagccaatcaaag |
34895990 |
T |
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| Q |
101 |
catctttgagaaacaaagtccctggcttcatcatatgatataccaaaaagccgatagttgaaatcaccaaaaaataccaccatatctgcatcagataact |
200 |
Q |
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| T |
34895991 |
catctttgagaaacaaagtccctggcttcatcatatgatataccaaaaagccgatagttgaaatcaccaaaaaataccaccatatctgcatcagataact |
34896090 |
T |
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| Q |
201 |
caggttttgcatcttctgagctggaacccatagcctatg |
239 |
Q |
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| T |
34896091 |
caggttttgcatcttctgagctggaacccatagcctatg |
34896129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 34957436 - 34957302
Alignment:
| Q |
71 |
agctggtccttttctctaagccaatcaaagcatctttgagaaacaaagtccctggcttcatcatatgatataccaaaaagccgatagttgaaatcaccaa |
170 |
Q |
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| T |
34957436 |
agctgatccctttctctaagccaatcaaagcatctttgagaaacaaaatctcttgcttcatcatatgaaatgtcatcaagacgatagttcaaatcaccaa |
34957337 |
T |
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| Q |
171 |
aaaataccaccatatctgcatcagataactcaggt |
205 |
Q |
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| T |
34957336 |
gaaatacaatcatgtctgcctcagataactcaggt |
34957302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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