View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1512_low_11 (Length: 249)
Name: NF1512_low_11
Description: NF1512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1512_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 35208739 - 35208977
Alignment:
| Q |
1 |
catctttattaatcttccaagtaggcatgtcatggagtattaaatatccctatcgttgtgttatggtcaaagagtccattaattagctctatatttcatt |
100 |
Q |
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| T |
35208739 |
catctttattaatcttccaagtaggcatgtcatggagtattaaatatccttatggttgtgttatggtcaaagagtccattaattagctccatatttcatt |
35208838 |
T |
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| Q |
101 |
gcttctgagttaagttgtgaccattaaatatgaaacagtgatatgtggacactccaaatgatgagtagttgttgccaagatacgaagccaactagccaag |
200 |
Q |
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| T |
35208839 |
gcttctgagttaagttgtgaccattaaatctgaaacagtgatatgtggacactccaaatgatgagtagttgtt---aagatacgaagccaactagccaag |
35208935 |
T |
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| Q |
201 |
gttggtaccatatacttgaatcctttctcccattcctatgct |
242 |
Q |
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| T |
35208936 |
gttggtaccatatacttgaatcctttctcccgttcctatgct |
35208977 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 32208447 - 32208398
Alignment:
| Q |
113 |
agttgtgaccattaaatatgaaacagtgatatgtggacactccaaatgat |
162 |
Q |
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| T |
32208447 |
agttgtgaccattaagtctgcaacggtgatatgtggccactccaaatgat |
32208398 |
T |
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