View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1512_low_13 (Length: 238)

Name: NF1512_low_13
Description: NF1512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1512_low_13
NF1512_low_13
[»] chr4 (8 HSPs)
chr4 (42-223)||(7004306-7004487)
chr4 (42-150)||(7039623-7039731)
chr4 (46-150)||(7020304-7020408)
chr4 (42-150)||(7027217-7027325)
chr4 (42-150)||(7047005-7047113)
chr4 (42-150)||(7052989-7053097)
chr4 (42-150)||(7013928-7014036)
chr4 (42-150)||(6994500-6994608)
[»] chr2 (1 HSPs)
chr2 (45-82)||(5859195-5859232)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 7004487 - 7004306
Alignment:
Q  42 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7004487 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 7004388  T
Q  142 ctgaaaatgcatataacaggatctatagttaacaatggtggatttcagaattccatcctgagattaattttccgtcggtagt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7004387 ctgaaaatgcatataacaggatctatagttaacaatggtggatttcagaattccctcctgagattaattttccgtcggtagt 7004306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 7039731 - 7039623
Alignment:
Q  42 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 141  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||    
T  7039731 ccgcatagagttcatccgagatgagtcccattccatgagcatatgggatttgataattatcttctttgtatgttgttatggggttccctagcagatatcc 7039632  T
Q  142 ctgaaaatg 150  Q
    |||||||||    
T  7039631 ctgaaaatg 7039623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 7020408 - 7020304
Alignment:
Q  46 atagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatccctga 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||| |||||| | |||||||||||||||||||||||||    
T  7020408 atagagttcatcagagatgagtcccattccatgagcatattggattcgataattatattctttgtgtgttgtaaaggggttccctagcagatatccctga 7020309  T
Q  146 aaatg 150  Q
    |||||    
T  7020308 aaatg 7020304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 7027325 - 7027217
Alignment:
Q  42 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 141  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||   |||||||||||||||||||||    
T  7027325 ccgcataaagttcatcagagatgagtcccattccatgagcatactggatttgataattatcttctttgtgtgttgtataggggttccctagcagatatcc 7027226  T
Q  142 ctgaaaatg 150  Q
    |||||||||    
T  7027225 ctgaaaatg 7027217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 7047113 - 7047005
Alignment:
Q  42 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 141  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||   |||||||||||||||||||||    
T  7047113 ccgcataaagttcatcagagatgagtcccattccatgagcatactggatttgatagttatcttctttgtatgttgtccaggggttccctagcagatatcc 7047014  T
Q  142 ctgaaaatg 150  Q
    |||||||||    
T  7047013 ctgaaaatg 7047005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 7053097 - 7052989
Alignment:
Q  42 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 141  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |||| ||| | |||||||||||||||||||||    
T  7053097 ccgcatacagttcatcagagatgagtcccattccatgagcatattgaattcgataattatcttctctatatgatgttaaggggttccctagcagatatcc 7052998  T
Q  142 ctgaaaatg 150  Q
    |||||||||    
T  7052997 ctgaaaatg 7052989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 7014036 - 7013928
Alignment:
Q  42 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 141  Q
    ||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||| |||| || ||||||| | |||||||||||||||||||||    
T  7014036 ccgcatagagttcatcagaaatgagccccattccatgagcatatgggatttgataattttgttctttgaatgttgttaaggggttccctagcagatatcc 7013937  T
Q  142 ctgaaaatg 150  Q
    ||| |||||    
T  7013936 ctggaaatg 7013928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 6994608 - 6994500
Alignment:
Q  42 ccgcatagagttcatcagagatgagtcccattccatgagcatattggatttgataattttcttctctgtatgttgtgatggggttccctagcagatatcc 141  Q
    ||||||| ||||||||||| ||||||||||||||||||| | || |||||||||| |||| |||||||| |||||| || ||||||||||||||||||||    
T  6994608 ccgcataaagttcatcagaaatgagtcccattccatgagtaaatgggatttgatagtttttttctctgtgtgttgttatagggttccctagcagatatcc 6994509  T
Q  142 ctgaaaatg 150  Q
    |||||||||    
T  6994508 ctgaaaatg 6994500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 5859232 - 5859195
Alignment:
Q  45 catagagttcatcagagatgagtcccattccatgagca 82  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  5859232 catatagttcatcagatatgagtcccattccatgagca 5859195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University