View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1512_low_3 (Length: 429)
Name: NF1512_low_3
Description: NF1512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1512_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 14 - 429
Target Start/End: Complemental strand, 25246141 - 25245725
Alignment:
| Q |
14 |
atatctgtacgtattggacaaaattgttctcaacttttactcaaatgcttttagagattcattcacctaaagttaaaaatatacctgcacctaactagtt |
113 |
Q |
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| T |
25246141 |
atatctgtacgtattggacaaaattgttctcaacttttactcaaatgcttttagagattcattcacctaaagttaaaaatatacctgcacctaactagtt |
25246042 |
T |
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| Q |
114 |
ccaggttacttcatgtatatactagaaaaaggttctctagcaatatattccagttgga-tattattattggtagtagaagttaacgatcctagcaatatt |
212 |
Q |
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| T |
25246041 |
ccaggttacttcatgtatatactagaaaaaggttctctagcaatatattccatttggaatattattattggtagtagaagttaaccatcctagcaatatt |
25245942 |
T |
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| Q |
213 |
ttctgtaatgagaaaaagtttaggggtaaaggtgaattattgaaggtctattagtggaaatggaggtgtatctatctagctattgttccatgtggcaagg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25245941 |
ttctgtaatgagaaaaagtttaggggtaaaggtgaattattgaaggtctattagtgggaatggaggtgtatctatctagctattgttccatgtggcaagg |
25245842 |
T |
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| Q |
313 |
tagtggtggtccttttgaattccctctcacctactttggcaactatcgtgaaagaaagaaagaaagttttccttccattaattattagttaataaacgag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25245841 |
tagtggtggtccttttgaattccctctcacctactttggcaactatcgtgaaagaaagaaagaaagttttccctccattaattattagttaataaacgag |
25245742 |
T |
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| Q |
413 |
aggtccttatcttcatt |
429 |
Q |
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| T |
25245741 |
tggtccttatcttcatt |
25245725 |
T |
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