View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1512_low_4 (Length: 407)

Name: NF1512_low_4
Description: NF1512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1512_low_4
NF1512_low_4
[»] chr8 (12 HSPs)
chr8 (16-353)||(39030120-39030485)
chr8 (355-407)||(38598965-38599017)
chr8 (355-407)||(1232844-1232896)
chr8 (344-407)||(25288123-25288187)
chr8 (354-406)||(1231526-1231578)
chr8 (355-407)||(7393192-7393244)
chr8 (355-407)||(34213765-34213817)
chr8 (355-407)||(4463473-4463525)
chr8 (355-407)||(34665771-34665823)
chr8 (355-406)||(33497664-33497715)
chr8 (355-407)||(27437566-27437618)
chr8 (355-403)||(34214580-34214628)
[»] scaffold0347 (2 HSPs)
scaffold0347 (355-407)||(13610-13662)
scaffold0347 (356-407)||(14640-14691)
[»] chr5 (15 HSPs)
chr5 (355-407)||(31107932-31107984)
chr5 (355-407)||(22870509-22870561)
chr5 (355-406)||(21979019-21979070)
chr5 (365-407)||(22869616-22869658)
chr5 (355-407)||(14744777-14744829)
chr5 (355-407)||(20856933-20856985)
chr5 (359-407)||(36476770-36476818)
chr5 (359-406)||(36477424-36477471)
chr5 (355-404)||(20857597-20857646)
chr5 (359-407)||(16532898-16532946)
chr5 (341-384)||(19892294-19892338)
chr5 (355-407)||(20072122-20072174)
chr5 (355-407)||(20072916-20072968)
chr5 (359-407)||(21978064-21978112)
chr5 (355-407)||(39181058-39181110)
[»] scaffold0009 (2 HSPs)
scaffold0009 (343-406)||(260990-261053)
scaffold0009 (355-407)||(262488-262540)
[»] chr7 (15 HSPs)
chr7 (355-406)||(38643551-38643602)
chr7 (355-407)||(12930773-12930825)
chr7 (355-407)||(45915855-45915907)
chr7 (355-406)||(4227220-4227271)
chr7 (355-406)||(7158232-7158283)
chr7 (355-405)||(12643101-12643151)
chr7 (343-407)||(12644180-12644244)
chr7 (355-407)||(12929288-12929340)
chr7 (355-407)||(37284110-37284162)
chr7 (355-407)||(38644707-38644759)
chr7 (355-407)||(45914527-45914579)
chr7 (355-403)||(4226126-4226174)
chr7 (355-407)||(27479988-27480040)
chr7 (355-407)||(37289357-37289409)
chr7 (355-407)||(47558031-47558083)
[»] chr2 (9 HSPs)
chr2 (346-407)||(25624480-25624541)
chr2 (355-407)||(24387352-24387404)
chr2 (343-407)||(20101758-20101823)
chr2 (355-407)||(24388303-24388355)
chr2 (355-407)||(25623289-25623341)
chr2 (355-407)||(20982525-20982577)
chr2 (355-407)||(29957818-29957870)
chr2 (344-407)||(20983308-20983371)
chr2 (355-407)||(20103191-20103243)
[»] scaffold1493 (1 HSPs)
scaffold1493 (344-407)||(582-646)
[»] chr4 (13 HSPs)
chr4 (355-407)||(23454955-23455007)
chr4 (350-407)||(54591625-54591682)
chr4 (357-405)||(54590146-54590194)
chr4 (355-405)||(53477129-53477179)
chr4 (355-404)||(23455739-23455788)
chr4 (355-407)||(38813555-38813607)
chr4 (355-407)||(38814374-38814426)
chr4 (359-407)||(38982643-38982691)
chr4 (355-406)||(55013136-55013187)
chr4 (355-406)||(56556583-56556634)
chr4 (343-406)||(56557373-56557436)
chr4 (355-407)||(13336885-13336937)
chr4 (355-407)||(52815664-52815716)
[»] chr3 (15 HSPs)
chr3 (355-407)||(29193040-29193092)
chr3 (355-407)||(32717152-32717204)
chr3 (355-407)||(48189146-48189198)
chr3 (350-407)||(11026679-11026736)
chr3 (359-404)||(29192040-29192085)
chr3 (350-407)||(45279331-45279388)
chr3 (355-407)||(2944713-2944765)
chr3 (359-407)||(37249204-37249252)
chr3 (368-406)||(1756564-1756602)
chr3 (355-406)||(2943914-2943966)
chr3 (355-407)||(22736737-22736789)
chr3 (359-407)||(37249845-37249892)
chr3 (371-407)||(43105250-43105286)
chr3 (359-407)||(43105881-43105929)
chr3 (359-407)||(45278549-45278597)
[»] chr1 (11 HSPs)
chr1 (355-406)||(2828194-2828245)
chr1 (355-405)||(13295629-13295679)
chr1 (357-407)||(25064936-25064986)
chr1 (357-407)||(25066005-25066055)
chr1 (350-407)||(51935246-51935303)
chr1 (355-403)||(13295136-13295184)
chr1 (355-407)||(29042893-29042945)
chr1 (359-407)||(32619389-32619437)
chr1 (359-407)||(46282840-46282888)
chr1 (355-407)||(49093042-49093094)
chr1 (359-407)||(50062995-50063043)
[»] chr6 (7 HSPs)
chr6 (355-407)||(33401173-33401225)
chr6 (360-407)||(8427412-8427459)
chr6 (355-406)||(17784433-17784484)
chr6 (350-407)||(33399962-33400019)
chr6 (355-407)||(14656481-14656533)
chr6 (355-407)||(4116800-4116852)
chr6 (355-407)||(4117594-4117646)
[»] scaffold0182 (1 HSPs)
scaffold0182 (355-407)||(14424-14476)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 39030120 - 39030485
Alignment:
Q  16 cctgtgatattcttcatatcctgatcactaatttgcaccacatttgtaacaaatgccttatttatttatacaatattcttcgtataaagatacactatct 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030120 cctgtgatattcttcatatcctgatcactaatttgcaccaaatttgtaacaaatgccttatttatttatacaatattcttcgtataaagatacactatct 39030219  T
Q  116 cgttcggttgaacctt----------ttaattctcatgaactctcagttacttgaatgattgaatcattgtttgcaaatcaccctctttggtggatcaat 205  Q
    ||||||||||||||||          |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39030220 cgttcggttgaaccttttaattctcattaattctcatgaactctcaattacttgaatgattgagtcattgtttgcaaatcaccctctttggtggatcaat 39030319  T
Q  206 gtaatcttctaccacaaatcagcagctccgactatcgt------------------tcacacaattgttgatatgtggttgattgacaacatcctaaata 287  Q
    || |||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||    
T  39030320 gttatcttctaccacaaatcagcagctccgactatcgttcacaagtcttctctaaatcacacaattgttgatatgtggttgattgacaacatcctaaata 39030419  T
Q  288 atcaaactaatgtgacccggtcaaaaatatgagaaaacaaattgtgatgtatttttattttatttt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030420 atcaaactaatgtgacccggtcaaaaatatgagaaaacaaattgtgatgtatttttattttatttt 39030485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 38598965 - 38599017
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  38598965 gcttaaatatgcatttcatccctgcaattataggccatttgatttttcatccc 38599017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 1232896 - 1232844
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  1232896 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatccc 1232844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 407
Target Start/End: Complemental strand, 25288187 - 25288123
Alignment:
Q  344 attttattttag-cttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||||||||||| |||||||| ||||||||||  |||||||||||| ||||||||||||||||||    
T  25288187 attttattttaggcttaaatatgcatttcatcactgcaattataggtcatttgatttttcatccc 25288123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 1231526 - 1231578
Alignment:
Q  354 agcttaaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    |||||||||| ||||||||||| | |||||||||||| |||||||||||||||    
T  1231526 agcttaaatatgcatttcatccctacaattataggccctttgatttttcatcc 1231578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 7393244 - 7393192
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||||||||  |||||||||| |||||||||||| ||||||||||||||||||    
T  7393244 gcttaaatagacatttcatccctgcaattataggtcatttgatttttcatccc 7393192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 34213765 - 34213817
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| |||||||||||||| ||||||||||||||||    
T  34213765 gcttaaatatgcttttcatccctgcaattataggccgtttgatttttcatccc 34213817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 4463525 - 4463473
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||  |||||||||    
T  4463525 gcttaaatatgcatttcatccctgcaagtataggccatttgaaatttcatccc 4463473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 34665771 - 34665823
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  34665771 gcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 34665823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 33497715 - 33497664
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    ||||||||| || |||||||| || ||||||||| |||||||||||||||||    
T  33497715 gcttaaatatgcttttcatccctgtaattatagggcatttgatttttcatcc 33497664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 27437618 - 27437566
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| ||||| |||||||| ||||| ||||| ||||    
T  27437618 gcttaaatatgcatttcatccctgcaaatataggccgtttgaattttcgtccc 27437566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 34214628 - 34214580
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttca 403  Q
    ||||||||| || |||||||| || ||||||||||| ||||||||||||    
T  34214628 gcttaaatatgcttttcatccctgtaattataggccgtttgatttttca 34214580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 13610 - 13662
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  13610 gcttaaatatgcatttcatccctgcaattataggccatttgatttttcatccc 13662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 14691 - 14640
Alignment:
Q  356 cttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||||||| ||||||||| | | |||||||||||||||||||||||||||||    
T  14691 cttaaatatgcatttcattccttcaattataggccatttgatttttcatccc 14640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 31107932 - 31107984
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  31107932 gcttaaatatgcatttcatccctgcaattataggccatttgatttttcatccc 31107984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 22870561 - 22870509
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  22870561 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatccc 22870509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 21979070 - 21979019
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    ||||||||| ||||||||||| |||||||||| |||||||||||||||||||    
T  21979070 gcttaaatatgcatttcatccctgcaattataagccatttgatttttcatcc 21979019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 22869616 - 22869658
Alignment:
Q  365 gcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  22869616 gcatttcatccttgtaattataggccatttgatttttcatccc 22869658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 14744829 - 14744777
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| |||||||||| | ||||||||||||||||||    
T  14744829 gcttaaatatgcatttcatccctgcaattatatgtcatttgatttttcatccc 14744777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 20856933 - 20856985
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  20856933 gcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 20856985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 36476770 - 36476818
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||| || |||||||| |||||||||||||| ||||||||||||||||    
T  36476770 aaatatgcttttcatccctgcaattataggccgtttgatttttcatccc 36476818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 36477471 - 36477424
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    ||||| || |||||||| |||||||||||||| |||||||||||||||    
T  36477471 aaatatgcttttcatccctgcaattataggccgtttgatttttcatcc 36477424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 20857646 - 20857597
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcat 404  Q
    ||||||||| || |||||||| || ||||||||||| |||||||||||||    
T  20857646 gcttaaatatgcttttcatccatgtaattataggccgtttgatttttcat 20857597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 16532898 - 16532946
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  16532898 aaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 16532946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 384
Target Start/End: Original strand, 19892294 - 19892338
Alignment:
Q  341 tttattttattttag-cttaaatacgcatttcatccttgcaatta 384  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||    
T  19892294 tttattttattttagacttaaatatgtatttcatccttgcaatta 19892338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 20072122 - 20072174
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||  || ||||||||||| ||||||||||||||||    
T  20072122 gcttaaatatgcttttcatctctgtaattataggccgtttgatttttcatccc 20072174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 20072968 - 20072916
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| || ||||||||| | ||||||||||||||||    
T  20072968 gcttaaatatgcttttcatccctgtaattataggtcgtttgatttttcatccc 20072916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 21978112 - 21978064
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||| || |||||||| || |||||| |||||||||||||||||||||    
T  21978112 aaatatgcttttcatccctgtaattatgggccatttgatttttcatccc 21978064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 39181058 - 39181110
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| || ||||||| ||| ||||||||||||||||    
T  39181058 gcttaaatatgcttttcatccctgtaattataagccgtttgatttttcatccc 39181110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 343 - 406
Target Start/End: Original strand, 260990 - 261053
Alignment:
Q  343 tattttattttagcttaaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    ||||||||||  ||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  260990 tattttatttaggcttaaatatgcatttcatccctgcaattataggtcatttgatttttcatcc 261053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 262540 - 262488
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| || ||||||||| ||||||||||||||||||    
T  262540 gcttaaatatgcatttcatccctgtaattataggtcatttgatttttcatccc 262488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 38643551 - 38643602
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  38643551 gcttaaatatgcatttcatccctgcaattataggccatttgatttttcatcc 38643602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 12930773 - 12930825
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  12930773 gcttaaatatgcatttcatccctgcaattataggtcatttgatttttcatccc 12930825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 45915907 - 45915855
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  45915907 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatccc 45915855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 4227271 - 4227220
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    ||||||||| ||||||||||| || |||||||||||||||||||||||||||    
T  4227271 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatcc 4227220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 7158232 - 7158283
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    ||||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  7158232 gcttaaatatgcatttcatccctacaattataggccatttgatttttcatcc 7158283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 12643101 - 12643151
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatc 405  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  12643101 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc 12643151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 12644244 - 12644180
Alignment:
Q  343 tattttattttagcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||||| ||| |||||||||| ||||||||||| |  ||||| ||||||||||||||||||||||    
T  12644244 tattttttttaagcttaaatatgcatttcatccctataattacaggccatttgatttttcatccc 12644180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 12929288 - 12929340
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| ||||| ||||||| |||||||||||||||||    
T  12929288 gcttaaatatgcatttcatccctgcaaatataggctatttgatttttcatccc 12929340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 37284110 - 37284162
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| || ||||||||||||||||||||||||||||    
T  37284110 gcttaaatatgcttttcatccctgtaattataggccatttgatttttcatccc 37284162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 38644759 - 38644707
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||||| |||||    
T  38644759 gcttaaatatgcatttcattcttgcaattataggtcatttgattttttatccc 38644707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 45914527 - 45914579
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||  || ||||||||||||||||||||||||||||    
T  45914527 gcttaaatatgcatttcatctctgtaattataggccatttgatttttcatccc 45914579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 4226126 - 4226174
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttca 403  Q
    ||||||||| ||||||||||| || ||||||||||||||||||| ||||    
T  4226126 gcttaaatatgcatttcatccctgtaattataggccatttgattcttca 4226174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 27479988 - 27480040
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| ||||||||||||||  |||||||||||||||    
T  27479988 gcttaaatatgcttttcatccctgcaattataggccgcttgatttttcatccc 27480040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 37289409 - 37289357
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| || |||||||||||||||| |||||||||||    
T  37289409 gcttaaatatgcttttcatccctgtaattataggccatttggtttttcatccc 37289357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 47558031 - 47558083
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||  |  |||||||||| |||||||||||||||||    
T  47558031 gcttaaatatgcatttcatctctttaattataggctatttgatttttcatccc 47558083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 25624541 - 25624480
Alignment:
Q  346 tttattttagcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||||||| ||||||||| ||||||||||| || ||||||||| ||||||||||||||||||    
T  25624541 tttattttggcttaaatatgcatttcatccctgtaattataggtcatttgatttttcatccc 25624480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 24387352 - 24387404
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  24387352 gcttaaatatgcatttcatccctgcaattataggccatttaatttttcatccc 24387404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 20101758 - 20101823
Alignment:
Q  343 tattttattttag-cttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||| ||||||| |||||||| || |||||||| || ||||||||||||||||||||||||||||    
T  20101758 tatttaattttaggcttaaatatgcttttcatccctgtaattataggccatttgatttttcatccc 20101823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 24388355 - 24388303
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| |||||||||| || |||||||||||||||||    
T  24388355 gcttaaatatgcatttcatccctgcaattataagcaatttgatttttcatccc 24388303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 25623289 - 25623341
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| |  ||||||||||||||||||||||||||||    
T  25623289 gcttaaatatgcatttcatccctataattataggccatttgatttttcatccc 25623341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 20982525 - 20982577
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  20982525 gcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 20982577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 29957818 - 29957870
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  29957818 gcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 29957870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 407
Target Start/End: Complemental strand, 20983371 - 20983308
Alignment:
Q  344 attttattttagcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||| |||| ||||||||| || |||||||| || |||||||| || ||||||||||||||||    
T  20983371 atttttttttggcttaaatatgcttttcatccctgtaattatagaccgtttgatttttcatccc 20983308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 20103243 - 20103191
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || ||| |||| || |||||||||||||| |||||||||||||    
T  20103243 gcttaaatatgctttttatccctgtaattataggccattagatttttcatccc 20103191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 407
Target Start/End: Original strand, 582 - 646
Alignment:
Q  344 attttattttag-cttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||||||||||| |||||||| ||||||||||  |||||||||||| ||||||||||||||||||    
T  582 attttattttaggcttaaatatgcatttcatcactgcaattataggtcatttgatttttcatccc 646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 23454955 - 23455007
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  23454955 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatccc 23455007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 54591682 - 54591625
Alignment:
Q  350 ttttagcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||| ||||||||| ||||||||||| |||||||||||  ||||||||||||||||||    
T  54591682 ttttggcttaaatatgcatttcatccctgcaattatagatcatttgatttttcatccc 54591625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 54590146 - 54590194
Alignment:
Q  357 ttaaatacgcatttcatccttgcaattataggccatttgatttttcatc 405  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  54590146 ttaaatatgcatttcatccctgcaattataggtcatttgatttttcatc 54590194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 53477179 - 53477129
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatc 405  Q
    ||||||||| ||||||||||  |||||||||||| ||||||||||||||||    
T  53477179 gcttaaatatgcatttcatctctgcaattataggtcatttgatttttcatc 53477129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 23455788 - 23455739
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcat 404  Q
    ||||||||| ||||||||||| || ||||||||| |||||||||||||||    
T  23455788 gcttaaatatgcatttcatccctgtaattataggtcatttgatttttcat 23455739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 38813555 - 38813607
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  38813555 gcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 38813607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 38814426 - 38814374
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || ||||||||||| |||| |||||| ||||||||||||||||    
T  38814426 gcttaaatatgcttttcatccttgtaattttaggccgtttgatttttcatccc 38814374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 38982691 - 38982643
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||| || |||||||| |||||||||||||| ||||||||||||||||    
T  38982691 aaatatgcttttcatccctgcaattataggccgtttgatttttcatccc 38982643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 55013187 - 55013136
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    ||||||||| || |||||||| || |||||||||| ||||||||||||||||    
T  55013187 gcttaaatatgcttttcatccatgtaattataggctatttgatttttcatcc 55013136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 56556583 - 56556634
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    ||||||||| || |||||||| || ||||||||||| |||||||||||||||    
T  56556583 gcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatcc 56556634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 406
Target Start/End: Complemental strand, 56557436 - 56557373
Alignment:
Q  343 tattttattttagcttaaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    |||||| ||| |||||||||| || |||||||| |  ||||||||||| |||||||||||||||    
T  56557436 tattttttttaagcttaaatatgcttttcatccctctaattataggccgtttgatttttcatcc 56557373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 13336937 - 13336885
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| ||||| |||||| |||||||  |||||||||    
T  13336937 gcttaaatatgcatttcatccctgcaaatataggtcatttgaaatttcatccc 13336885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 52815664 - 52815716
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| || ||||||||||| |||||||||| |||||    
T  52815664 gcttaaatatgcttttcatccctgtaattataggccgtttgattttttatccc 52815716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 29193092 - 29193040
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  29193092 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatccc 29193040  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 32717204 - 32717152
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| ||||||||||| || ||||||||| ||||||||||||||||||    
T  32717204 gcttaaatatgcatttcatccctgtaattataggtcatttgatttttcatccc 32717152  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 48189198 - 48189146
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || ||||||||||| ||||||||||| ||||||||||||||||    
T  48189198 gcttaaatatgcttttcatccttgtaattataggccgtttgatttttcatccc 48189146  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 11026736 - 11026679
Alignment:
Q  350 ttttagcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||| ||||||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  11026736 ttttggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 11026679  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 29192040 - 29192085
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcat 404  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||    
T  29192040 aaatatgcatttcatccctgtaattataggccatttgatttttcat 29192085  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 45279388 - 45279331
Alignment:
Q  350 ttttagcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||| ||||||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  45279388 ttttggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 45279331  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 2944765 - 2944713
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  2944765 gcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 2944713  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 37249204 - 37249252
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||| || |||||||| |||||||||||||| ||||||||||||||||    
T  37249204 aaatatgcttttcatccctgcaattataggccgtttgatttttcatccc 37249252  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 1756564 - 1756602
Alignment:
Q  368 tttcatccttgcaattataggccatttgatttttcatcc 406  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  1756564 tttcatccttgtaattataggccgtttgatttttcatcc 1756602  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 2943914 - 2943966
Alignment:
Q  355 gcttaaatacgcatttc-atccttgcaattataggccatttgatttttcatcc 406  Q
    ||||||||| || |||| |||| |||||||||||||| |||||||||||||||    
T  2943914 gcttaaatatgcttttctatccctgcaattataggccgtttgatttttcatcc 2943966  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 22736789 - 22736737
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| |  |||||||| || ||||||||| ||||||||||||||||||    
T  22736789 gcttaaatatgtttttcatccctgtaattataggtcatttgatttttcatccc 22736737  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 37249892 - 37249845
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||| || ||||||||| ||||||||||||| ||||||||||||||||    
T  37249892 aaatatgcttttcatcct-gcaattataggccgtttgatttttcatccc 37249845  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 43105250 - 43105286
Alignment:
Q  371 catccttgcaattataggccatttgatttttcatccc 407  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  43105250 catccttgtaattataggccgtttgatttttcatccc 43105286  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 43105929 - 43105881
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||||||  |||||||| || ||||||||||| ||||||||||||||||    
T  43105929 aaatacgtttttcatccctgtaattataggccgtttgatttttcatccc 43105881  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 45278549 - 45278597
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  45278549 aaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 45278597  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 2828194 - 2828245
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    ||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  2828194 gcttaaatatgcatttcatccttgcaattatagatcatttgatttttcatcc 2828245  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 13295679 - 13295629
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatc 405  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  13295679 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc 13295629  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 357 - 407
Target Start/End: Original strand, 25064936 - 25064986
Alignment:
Q  357 ttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||| ||||||||||| ||||||||||||  |||||||||||||||||    
T  25064936 ttaaatatgcatttcatccctgcaattataggtaatttgatttttcatccc 25064986  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 407
Target Start/End: Complemental strand, 25066055 - 25066005
Alignment:
Q  357 ttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||| ||||||||||| |  ||||||| ||||||||||||||||||||    
T  25066055 ttaaatatgcatttcatccctataattataagccatttgatttttcatccc 25066005  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 51935303 - 51935246
Alignment:
Q  350 ttttagcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||| ||||||||| || |||||||| || ||||||| | ||||||||||||||||||    
T  51935303 ttttggcttaaatatgcttttcatccatgtaattatatgtcatttgatttttcatccc 51935246  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 13295136 - 13295184
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttca 403  Q
    ||||||||| |||||||| || || ||||||||| ||||||||||||||    
T  13295136 gcttaaatatgcatttcacccctgtaattataggtcatttgatttttca 13295184  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 29042945 - 29042893
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| |  |||||||||||||| |||||| ||||||| ||||||||||    
T  29042945 gcttaaataggtctttcatccttgcaaatataggtcatttgaattttcatccc 29042893  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 32619389 - 32619437
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||| || |||||||| || |||||| |||||||||||||||||||||    
T  32619389 aaatatgcttttcatccctgtaattatgggccatttgatttttcatccc 32619437  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 46282888 - 46282840
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  46282888 aaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 46282840  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 49093042 - 49093094
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||| | || |||||||| || ||||||||||| ||||||||||||||||    
T  49093042 gcttaaacatgcttttcatccctgtaattataggccgtttgatttttcatccc 49093094  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 50063043 - 50062995
Alignment:
Q  359 aaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  50063043 aaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 50062995  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 33401225 - 33401173
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| |||||||||||||| ||||||||||||||||    
T  33401225 gcttaaatatgcttttcatccctgcaattataggccgtttgatttttcatccc 33401173  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 8427459 - 8427412
Alignment:
Q  360 aatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  8427459 aatatgcatttcatccctgcaattataggtcatttgatttttcatccc 8427412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 17784484 - 17784433
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatcc 406  Q
    ||||||||| || |||||||| |||||| |||||||||||||||||||||||    
T  17784484 gcttaaatatgcttttcatccctgcaatgataggccatttgatttttcatcc 17784433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 33399962 - 33400019
Alignment:
Q  350 ttttagcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    |||| ||||||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  33399962 ttttggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccc 33400019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 14656481 - 14656533
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || |||||||| |||||||||||||  ||||||||||||||||    
T  14656481 gcttaaatatgcttttcatccctgcaattataggctgtttgatttttcatccc 14656533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 4116800 - 4116852
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| |  |||||||| || ||||||||||| ||||||||||||||||    
T  4116800 gcttaaatatgtttttcatccctgtaattataggccgtttgatttttcatccc 4116852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 4117646 - 4117594
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| |  |||||||| || ||||||||||| ||||||||||||||||    
T  4117646 gcttaaatatgtttttcatccctgtaattataggccgtttgatttttcatccc 4117594  T

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Target: scaffold0182 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 14476 - 14424
Alignment:
Q  355 gcttaaatacgcatttcatccttgcaattataggccatttgatttttcatccc 407  Q
    ||||||||| || ||||| || || ||||||||||||||||||||||||||||    
T  14476 gcttaaatatgcttttcacccctgtaattataggccatttgatttttcatccc 14424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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