View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15130_low_1 (Length: 732)
Name: NF15130_low_1
Description: NF15130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15130_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 1 - 730
Target Start/End: Original strand, 4775039 - 4775762
Alignment:
| Q |
1 |
cagcataggtgtacgaaaccaacccatcaagattacagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcaccaagaccctcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4775039 |
cagcataggtgtacgaaaccaacccatcaagattagagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcactaagaccctcct |
4775138 |
T |
|
| Q |
101 |
tttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaacatgagga |
200 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4775139 |
tttaaataaattgtctctagcaggaacatgattcaaactcaaacgtaaagcaaaaattgagactttgagaagtactactttaagccaaagaacatgagga |
4775238 |
T |
|
| Q |
201 |
gtagagttctgaaacacctttgttactttattacaagcattgttaactatgtaactatgagatgtgggtaaatgccaaatccatctatcctctgtagcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775239 |
gtagagttctgaaacacctttgttactttattacaagcattgttaactatgtaactatgagatgtgggtaaatgccaaatccatctatcctctgtagcca |
4775338 |
T |
|
| Q |
301 |
cctgcaatgt---------atacgttctgttatattcaagtcaatagaa---aatgttaacatttgtgtggccatatatacatataatacaatgatgaat |
388 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4775339 |
cctgcgatgtataggataaatacgttctgttatattcaagtcaatagaaaataatgttaacatttgtgtggccatatatacatataatacaatgatgaat |
4775438 |
T |
|
| Q |
389 |
tatgctaaaatcatggaacagtcaactatactaattggctatttactatgggatatgatttccatttacagatattattacaaccattattctttgattt |
488 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775439 |
tatgctaaaatcatggaacagtcaacta---------------tactatgggatatgatttccatttacagatattattacaaccattattctttgattt |
4775523 |
T |
|
| Q |
489 |
ggtcaatgcttaagttaatactcctacacgccccctcaagaaggaggtatcatcaataactccaatcttgtctttaaggaagtgatgccgtaccgaggat |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4775524 |
ggtcaatgcttaagttaatactcctacacgccccctcaagaaggaggtatcatcaataactccaatcttgtctttaaggaagtgatgccgtaccgaggat |
4775623 |
T |
|
| Q |
589 |
aacggctttgttagaagatcgactggttgatgacttgttgggacatgtgaaacttgaagcttcttggcggcaacgagatcgcgaacaaaatgataagcta |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
4775624 |
aacggctttgttagaagatcgactggttgatgacttgttgggacatgtgaaacttgaagcttcttggcggcaacgagatcgcgaacaaaatgataatcta |
4775723 |
T |
|
| Q |
689 |
tggcaatatgcttcatcctatagtactgaaagacagggtttg |
730 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
4775724 |
tggcaatatgcttcatcctagag---tgaaagacagggtttg |
4775762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 90 - 292
Target Start/End: Original strand, 29552984 - 29553195
Alignment:
| Q |
90 |
aagaccctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaa |
189 |
Q |
| |
|
||||||||||||||| ||||||||| | || ||||| | |||||| || |||||| ||||||||||| |||||||||||| | || | ||||||||||| |
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|
| T |
29552984 |
aagaccctccttttaaataaattgtttttagtaggaatacgattcagacccaatcgccaagcaaaaatagagactttgagaggaaccattttaagccaaa |
29553083 |
T |
|
| Q |
190 |
gaac---------atgaggagtagagttctgaaacacctttgttactttattacaagcattgttaactatgtaactatgagatgtgggtaaatgccaaat |
280 |
Q |
| |
|
|||| |||||||| |||||||| || ||| | | ||||||| | |||||| ||||| ||||||| ||||| | | ||||||||||||| |
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|
| T |
29553084 |
gaacctgagaattctgaggagtggagttctgcaaaccctccatcaatttattatacgcattgctaactgtgtaactctgagaagagtgtaaatgccaaat |
29553183 |
T |
|
| Q |
281 |
ccatctatcctc |
292 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29553184 |
ccatctatcctc |
29553195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 443 - 712
Target Start/End: Original strand, 43060836 - 43061108
Alignment:
| Q |
443 |
atgatttccatttacagatattattacaaccattattctttgatttggtcaatgcttaagttaatactcctacacgccccctcaagaaggaggtatcatc |
542 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
43060836 |
atgatttccatttactgatatcattacaaccattgttatttgatttggtaaatgcttaagttaatactcctacacgcccgctcaagatggaggtatcatc |
43060935 |
T |
|
| Q |
543 |
aataactccaatcttgtctttaaggaagtgatgccgtaccgaggataacggctttgttagaagatcgactggttgatgacttgttgggacatgtgaaact |
642 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||||| |
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|
| T |
43060936 |
aataactccaatcttgtctttaaggaagtgatgtcgtaccgaggataacggctttgtgagaagatcgggtagctgatgacttgttgggacatgtgaaact |
43061035 |
T |
|
| Q |
643 |
tgaagcttcttg---gcggcaacgagatcgcgaacaaaatgataagctatggcaatatgcttcatcctatagt |
712 |
Q |
| |
|
|||||||||||| || ||||||||||||| ||||||||||||| |||||||||| || ||||||||||||| |
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|
| T |
43061036 |
tgaagcttcttggcagcagcaacgagatcgcaaacaaaatgataatctatggcaatgtgtttcatcctatagt |
43061108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 17173714 - 17173614
Alignment:
| Q |
93 |
accctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaa |
192 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| | ||||||||| ||| || |||||||| ||||| ||||||||| | || |||||||||||||||| |
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|
| T |
17173714 |
accctccttttaaataaattgtcttttgtaggaatacgattcaaacccaaacgccaagcaaatattgatactttgagatgaaccactttaagccaaagaa |
17173615 |
T |
|
| Q |
193 |
c |
193 |
Q |
| |
|
| |
|
|
| T |
17173614 |
c |
17173614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 43060749 - 43060807
Alignment:
| Q |
316 |
ttctgttatattcaagtcaatagaaaatgttaacatttgtgtggccatatatacatata |
374 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
43060749 |
ttctgttgtattcaagtcaatagaaaatattaacatttgtgtggtaatatatatatata |
43060807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 348 - 516
Target Start/End: Original strand, 448506 - 448677
Alignment:
| Q |
348 |
acatttgtgtggccatatatacatataatacaatgatgaattatgctaaaatcatggaacagtcaactatactaattggctatttactatgggatatgat |
447 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
448506 |
acatttgtgtagccatatatacatggaatacaatgatgaatattgctcaaatcatggaacagtcaactatactaattggctagttactataagatatgat |
448605 |
T |
|
| Q |
448 |
ttccatttacagatattattacaaccattattctttgatttggtcaatgc---ttaagttaatactcctaca |
516 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
448606 |
ttccatttactgatattattacacccatcattatttgatttggtcaatgctaattaagttaatactcctaca |
448677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 38397807 - 38397707
Alignment:
| Q |
93 |
accctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaa |
192 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| | ||||||||| ||| || ||||| |||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
38397807 |
accctccttttaaataaattgtcttttgtaggaatacgattcaaacccaaacgccaagcgaaaattgatactttgagagaaaccactttaagccaaagaa |
38397708 |
T |
|
| Q |
193 |
c |
193 |
Q |
| |
|
| |
|
|
| T |
38397707 |
c |
38397707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 569
Target Start/End: Original strand, 42019449 - 42019520
Alignment:
| Q |
498 |
ttaagttaatactcctacacgccccctcaagaaggaggtatcatcaataactccaatcttgtctttaaggaa |
569 |
Q |
| |
|
|||||| ||||||||| || |||||| || | |||| |||| |||| |||||||||||||||||||||||| |
|
|
| T |
42019449 |
ttaagtaaatactcctttactccccctgaaaatggagttatcttcaagaactccaatcttgtctttaaggaa |
42019520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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