View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15130_low_2 (Length: 463)
Name: NF15130_low_2
Description: NF15130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15130_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 44142466 - 44142032
Alignment:
| Q |
18 |
gttttctgggtgcaaatttcatttactctgaacatagttttattaatttattttcttactacagtttttccataccaaatgaaactctgagccatgcctt |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142466 |
gttttctgggtgcaaatttcatttactctgaacatggttttattaatttattttcttactacagtttttccataccaaatgaaactctgagccatgcctt |
44142367 |
T |
|
| Q |
118 |
tggctatttttgtttaattcttcacagttcattcaccagtgatccctcagggagacataattcaccccatttcctacctttttctccttacccttatctt |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142366 |
tggctatttttgtttaattcttcacagttcactcaccactgatccctcagggagacataattcaccccatttcctacctttttctccttacccttatctt |
44142267 |
T |
|
| Q |
218 |
ttatgatttccagctggattccggacttttatgttttctgcagcttctgtccgaggagcaaaacatgggttttccttcacattcaataggtatactttcc |
317 |
Q |
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| T |
44142266 |
ttatgatttccagctggattccggacttttatgttttctgcagcttcagtccgaggagcaaaacatgggttttccttcacattcaataggtatactttcc |
44142167 |
T |
|
| Q |
318 |
tcacttgagaaaaaacatttcttttctctatttgtatttgttcagtaattgagtggaaatgggcgaaagcatggtttgttttcatgagtttatttgggct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142166 |
tcacttgagaaaaaacatttcttttctctatttgtatttgttcaataattgagtggaaatgggcgaaagcatggtttgttttcatgagtttatttgggct |
44142067 |
T |
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| Q |
418 |
atatatctttagggccactactgattcggattcat |
452 |
Q |
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| T |
44142066 |
atatatctttagggctactactgattcggattcat |
44142032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 50063129 - 50062794
Alignment:
| Q |
18 |
gttttctgggtgcaaatttcatttactctgaacatagttttattaatttattttcttactacagtttttccataccaaatgaaactctgagccatgcctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50063129 |
gttttctgggtgcaaatttcatttactctgaacatagttttattaatttattttcttactacagtttttccataccaaatgaaactctgagccatgcctt |
50063030 |
T |
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| Q |
118 |
tggctatttttgtttaattcttcacagttcattcaccagtgatccctcagggagac-----------ataattcaccccatttcctacctttttctcctt |
206 |
Q |
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| T |
50063029 |
tggctatttttgtttaattcttcatagttcactcaccactgatccctcagggtgacgtccacacttcataattcaccccatttccaacctttttctcctt |
50062930 |
T |
|
| Q |
207 |
acccttatcttttatgatttccagctggattccggacttttatgttttctgcagcttctgtccgaggagcaaaacatgggttttccttcacattcaatag |
306 |
Q |
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| T |
50062929 |
acccttatcttttatgatttccagctggattgcggacttttatgttttctgcagcttcagtccgaggagcaaaacatgggttttccttcacattcaatag |
50062830 |
T |
|
| Q |
307 |
gtatactttcctcacttgagaaaaaacatttctttt |
342 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
50062829 |
gtatactttcctcacttgagaaaaaacatttctttt |
50062794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 364 - 452
Target Start/End: Complemental strand, 50062698 - 50062610
Alignment:
| Q |
364 |
aattgagtggaaatgggcgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggccactactgattcggattcat |
452 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
50062698 |
aattgagcggaaatgggcgaaagcatattttgttttcatgagtttatttgggctatatatctttagggctactactgattcggattcat |
50062610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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