View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15131_high_1 (Length: 643)
Name: NF15131_high_1
Description: NF15131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15131_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 32 - 628
Target Start/End: Complemental strand, 46736861 - 46736265
Alignment:
| Q |
32 |
ttcaatatctaatatagaatatatatgaagtcaactagtaaattgacaagcaagccaacaaatgacagttgaaggctgcaacatacctccgatatttcca |
131 |
Q |
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| T |
46736861 |
ttcaatatctaatataaaatatatatgaagtcaaccagtaaattgacaagcaagccaacaaatgacagttgaaggctgcaacatacctccgatatttcca |
46736762 |
T |
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| Q |
132 |
tagacaacaactccgatatttccataaacgacaatgacttacttaatgtacataataatactcattaaaaattgagtatgactattatgggccacgagca |
231 |
Q |
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| T |
46736761 |
tagacaacaactccgatatttccatagacgacaatgacttacttaatgtacataattatactcattaaaaattgagtatgattattatgggccacgagca |
46736662 |
T |
|
| Q |
232 |
ggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcctcctttgcttgtatcaatttcttccaacattgtcaccacatctttcattt |
331 |
Q |
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| T |
46736661 |
ggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcctcctttgcttgtatcaattttttccaacattgtcaccacatctttcattt |
46736562 |
T |
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| Q |
332 |
ccggacgcttttctggattcttgtcccagcatcttttcattatacctgctaatgcacttggacagcatctaggaatctctggtctcaaattctgagcaag |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46736561 |
ccggacgcttttctggattcttgtcccagcatcttttcattatatctgctaatgcacttggacagcatctaggaatctctggtctcaaattctgagcaag |
46736462 |
T |
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| Q |
432 |
aatgaaagaaaagttgattataataaataggaaatttagaatgatgtatgaaacttaataaagtatttcaagagaaaatgtctatggatgaaaataatat |
531 |
Q |
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| T |
46736461 |
aatgaaagaaaagttgaatataataaataggaaatgtagaatgatgtatgaaacttaataaagtatttcaagagaaaacatctatggatgaaaataatat |
46736362 |
T |
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| Q |
532 |
taaaagatgacggcgttacagggagcactcttatgaatactttgatacttaataagagtaaatttagttaaaaatacttaatatttatggtcatatg |
628 |
Q |
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| T |
46736361 |
taaaagatgacggcgttacagggagcactcttatgaatactttgatacttaataagagtaaatttagttaaaaatacttaatatttatggtcatatg |
46736265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 986262 - 986195
Alignment:
| Q |
271 |
atcattccgcctcctttgcttgtatcaatttcttccaacattgtcaccacatctttcatttccggacg |
338 |
Q |
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|||||||| || |||||||||||||| | | |||| | |||| |||||||||| |||||||||||||| |
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| T |
986262 |
atcattccaccacctttgcttgtatccagtgcttctagcattatcaccacatccttcatttccggacg |
986195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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