View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15131_high_12 (Length: 314)

Name: NF15131_high_12

Description: NF15131

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15131_high_12

[»] chr7 (3 HSPs)

Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 3)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 135; E-Value: 2e-70

Query Start/End: Original strand, 1 - 135

Target Start/End: Original strand, 42225576 - 42225710

Alignment:

Q	1	cctgctcaagatgccatttccttaatagaaagattttcatgtattttaaagactaagttgataaatttcatatacgttaaaaactacttattatattcat	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42225576	cctgctcaagatgccatttccttaatagaaagattttcatgtattttaaagactaagttgataaatttcatatacgttaaaaactacttattatattcat	42225675	T

Q	101	gtagtttaagaactaaatcaaaaacaaaatgatag	135	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42225676	gtagtttaagaactaaatcaaaaacaaaatgatag	42225710	T

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Target: chr7; HSP #2

Raw Score: 91; E-Value: 4e-44

Query Start/End: Original strand, 206 - 296

Target Start/End: Original strand, 42225794 - 42225884

Alignment:

Q	206	aggaatttgttgaacaaaaacacacgtaccaatgtagtcggtgaggactcttccgtcggagaaacgaccggcaggtttgccgggaaaggtg	296	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42225794	aggaatttgttgaacaaaaacacacgtaccaatgtagtcggtgaggactcttccgtcggagaaacgaccggcaggtttgccgggaaaggtg	42225884	T

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Target: chr7; HSP #3

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 136 - 177

Target Start/End: Original strand, 42225724 - 42225765

Alignment:

Q	136	agaatgagtcaaaagcaaaaaacatctcacgattacccgtac	177	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|
T	42225724	agaatgagtcaaaagcaaaaaacatctaacgataacacgtac	42225765	T

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