View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15131_high_14 (Length: 298)
Name: NF15131_high_14
Description: NF15131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15131_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 42825424 - 42825146
Alignment:
| Q |
5 |
gagagagaagaaggtgttgattctaataattcaagagaaattaatagtattcatttgaaacaacaacactttgtgctagtacatggcataggtggtggag |
104 |
Q |
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| T |
42825424 |
gagatagaagatggtgttgattctaataattcaagagaaattaatagtattcatttgaaacaacaacactttgtgctagtacatggcataggtggtggag |
42825325 |
T |
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| Q |
105 |
gttggtgctggtacaaaattaagtgccttatggagaattctgggtacaaagtctcatgcatagaccttaaaagtagtggaattgatcaatctgatgctga |
204 |
Q |
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| T |
42825324 |
gttggtgctggtacaaaattaagtgccttatggagaattctgggtacaaagtctcatgcatagaccttaaaagtagtggaattgatcaatctgatgctga |
42825225 |
T |
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| Q |
205 |
ttctattctaacttttgatgattataataaacctgttattgatttcatgtctgctttaccagataatgaacaggtatgt |
283 |
Q |
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| T |
42825224 |
ttctattctaacttttgatgattataataaacctgttattgatttcatgtctgctttaccagataatgaacaggtatgt |
42825146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 71 - 279
Target Start/End: Original strand, 28794771 - 28794979
Alignment:
| Q |
71 |
cactttgtgctagtacatggcataggtggtggaggttggtgctggtacaaaattaagtgccttatggagaattctgggtacaaagtctcatgcatagacc |
170 |
Q |
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| T |
28794771 |
cactttgtgttagtacatggcataggtggaggaggttggtgctggtacaaaatcaggtgccttatggagaattctggctacaaagtctcttgcatagacc |
28794870 |
T |
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| Q |
171 |
ttaaaagtagtggaattgatcaatctgatgctgattctattctaacttttgatgattataataaacctgttattgatttcatgtctgctttaccagataa |
270 |
Q |
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| T |
28794871 |
tcaaaagtgcaggaattaatcaatctgatgctgattctgttctttcttttgatgattataatcaacccctcttggatttcatgtcttctttgcctgaaaa |
28794970 |
T |
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| Q |
271 |
tgaacaggt |
279 |
Q |
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| T |
28794971 |
tgaacaggt |
28794979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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