View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15131_high_17 (Length: 279)
Name: NF15131_high_17
Description: NF15131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15131_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 111 - 259
Target Start/End: Complemental strand, 16344039 - 16343891
Alignment:
| Q |
111 |
cctctatctcaggtaacttaacctcattaacaacaacaaactccatcactgattttgttttgttgaaagcttttaatgttaattgtcaccattcaaaagc |
210 |
Q |
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| T |
16344039 |
cctctatctcaggtaacttaacctcattaacaacaacaaactccatcactgattttgttttgttgaaagcttttaatgttaattggcaccattcaaaagc |
16343940 |
T |
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| Q |
211 |
tcccaaaatcatagaagtgatattttaccctcctatgcaatcttggatc |
259 |
Q |
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| T |
16343939 |
tcccaaaatcatagaagtgatattttaccctcctattcaatcttggatc |
16343891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 16344105 - 16344044
Alignment:
| Q |
11 |
atcatcattctgaatgccatctggttttgtagaaacaacttgagattcaacaacaccaagcc |
72 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16344105 |
atcaacattctgaatgccatctggttttgtagaaataacttgagattcaacaacaccaagcc |
16344044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 12043063 - 12042958
Alignment:
| Q |
92 |
aatatgatcatagctagtacctctatctcaggtaacttaacctcattaacaacaacaaactccatcactgattttgttttgttgaaagcttttaatgtta |
191 |
Q |
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| T |
12043063 |
aatatgattattgttagcacctctatctcaggaaacttaacctctttgaccacaataaatttcattgctgactttg-attgttgaaagcttttaatgtca |
12042965 |
T |
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| Q |
192 |
attgtca |
198 |
Q |
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| T |
12042964 |
actgtca |
12042958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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