View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15131_high_2 (Length: 537)
Name: NF15131_high_2
Description: NF15131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15131_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 224 - 517
Target Start/End: Complemental strand, 3928878 - 3928564
Alignment:
| Q |
224 |
gtcacccttggcattgaccatatgcaacatgacccaagcgtcctgatcattcattaaaatactttcattagtctacaaataaattaaatgctacactttt |
323 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3928878 |
gtcatccttggcattgaccatatgcaacatgaccctagcgtcctgatcattcattaaaatactttcattagtctaaaaataaattaaatgctacactttt |
3928779 |
T |
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| Q |
324 |
aaaaccgaaaatatttatgtcgaccatcacaccatatgttaaattcacacagcagcatttactatgtctcgtgactctct-------------------- |
403 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |
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| T |
3928778 |
aaaaccgaaaatatttatgtcgaccatcacaccataagttaaattcacacataagcatttactatgtcttgtgactctcttcttctaattgtggagaaag |
3928679 |
T |
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| Q |
404 |
-ttgttttacacaacaaaaatttgcaatggaatacttgttttttaactagttgagtaatagatgaaaactgaaaactatcttaaaagagttggtaaagtc |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3928678 |
attgttttacacaacaaaaatttgcaatggaatacttgttttttaactagttgagtaatagatgaaaactgaaaactatcttaaaagagttggtaaagtc |
3928579 |
T |
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| Q |
503 |
agattagctaggtac |
517 |
Q |
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||||||||||||||| |
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| T |
3928578 |
agattagctaggtac |
3928564 |
T |
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