View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15131_high_5 (Length: 509)
Name: NF15131_high_5
Description: NF15131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15131_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 108 - 502
Target Start/End: Complemental strand, 6180085 - 6179691
Alignment:
| Q |
108 |
ctattcacctcaacaaacttccttcaccttgtcatgataatatctttttcatcaaaacccatcatcttatcagtctaaaaaccatcctccctactgaaag |
207 |
Q |
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| T |
6180085 |
ctattcacctcaacaaacttccttcaccttgtcatgataatatctttttcatcaaaacccatcatcttatcagtctaaaaaccatcctccctactgaaag |
6179986 |
T |
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| Q |
208 |
aataactaaccctttacttttacctaaggggaaactcctcaagctgaatggtcaagtgaagaccctgaaacatccatgccctatgaggtgtgggtgtagg |
307 |
Q |
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| T |
6179985 |
aataactaaccctttacttttacctaaggggaaactcctcaagctgaatggtcaagtgaagaccctgaaacatccatgccctatgaggtgtgggtgtagg |
6179886 |
T |
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| Q |
308 |
aacccctttctctggacaaaaacgaataaagcataggtggtatacatggcaatcattcatgtgacggaggccgaggaaccaacatccccctaacgatgcc |
407 |
Q |
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| T |
6179885 |
aacccctttctctggacaaaaacgaataaagcataggtggtatacatggcaaacatccatgtgtcggaggccgaggaaccaacatctccctaacgatgcc |
6179786 |
T |
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| Q |
408 |
ttgagatgaaacgactctgcactctaccgctcttctatatgattcaatactatgttttggaacagaggaaggttccaactcataattgtcccttt |
502 |
Q |
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| T |
6179785 |
ttaagatgaaatgactctgcactccatctctcttctatatgattcaatactatgttttggaatagaggaaggttccaactcaaaattgccccttt |
6179691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 6181466 - 6181372
Alignment:
| Q |
18 |
atcaagatggttatatgcaatgaagtctcgtacctttgtcttcttaaacctaccatctagacccttaatattaatagatcctataatcatctatt |
112 |
Q |
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| T |
6181466 |
atcaagatggttatatgcaatgaagtctcgtacctttgtcttcttgatcctaccatctagacccttaatattattagatcctataatcatctatt |
6181372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 6221641 - 6221547
Alignment:
| Q |
18 |
atcaagatggttatatgcaatgaagtctcgtacctttgtcttcttaaacctaccatctagacccttaatattaatagatcctataatcatctatt |
112 |
Q |
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| T |
6221641 |
atcaagatggttatatgcaatgaagtctcgtacctttgtcttcttgatcctaccatctagacccttaatattattagatcctataatcatctatt |
6221547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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