View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15131_low_10 (Length: 336)
Name: NF15131_low_10
Description: NF15131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15131_low_10 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 980278 - 980597
Alignment:
| Q |
17 |
actttctagaaggggatatcccaattcccaaacctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcatatggattagcatacat |
116 |
Q |
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| T |
980278 |
actttctagaaggggatatcccaattcccaaacctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcgtatggattagcatacat |
980377 |
T |
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| Q |
117 |
tgttgaaaaggcactagactcagctgcggatttttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagttcaagtcctcaaaccaatt |
216 |
Q |
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| T |
980378 |
tgttgaaaaggcactagactcagctgcggatttttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagttcaagtcctcaaaccaatt |
980477 |
T |
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| Q |
217 |
aaccggggttttnnnnnnnnnntagaagtagtcaagctccttcattactctaaacaaactttagtagtaaattttaattagcaaaattgtagaagtgaat |
316 |
Q |
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| T |
980478 |
aaccggggttttaaaaaaaaattagaagtagtcaagctccttcattactctaaacaaactttagtagtaaattttaattagaaaaattgtataagtgagt |
980577 |
T |
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| Q |
317 |
ctagagctctctagttgaac |
336 |
Q |
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| T |
980578 |
ctagagctctctagttgaac |
980597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 50 - 336
Target Start/End: Original strand, 27146425 - 27146710
Alignment:
| Q |
50 |
ctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcatatggattagcatacattgttgaaaaggcactagactcagctgcggattt |
149 |
Q |
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| T |
27146425 |
ctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcgtatggattagcatacattgttgaaaaggcactagactcaactgcggattt |
27146524 |
T |
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| Q |
150 |
ttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagttcaagtcctcaaaccaattaaccggggttttnnnnnnnnnntagaagtagtc |
249 |
Q |
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| T |
27146525 |
ttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagttcaagtcctcaaaccaattaaacggggtttt-aaaaaaaattagaagtagtc |
27146623 |
T |
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| Q |
250 |
aagctccttcattactctaaacaaactttagtagtaaattttaattagcaaaattgtagaagtgaatctagagctctctagttgaac |
336 |
Q |
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| T |
27146624 |
aagctccttcattactctaaacaaactttagtagtaaattttaattagcaaaattgtagaagtgagtctagagctctctagttgaac |
27146710 |
T |
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