View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15131_low_14 (Length: 306)
Name: NF15131_low_14
Description: NF15131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15131_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 36871419 - 36871137
Alignment:
| Q |
8 |
ccaataatattcgacactaatatgaaaaatcatcttgggatacggttactatttttagcatttatatctctcaagtgcaaaaaacaggacactttatctg |
107 |
Q |
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| T |
36871419 |
ccaaaaatattcgacactaatatgaaaaatcatcttgggatacggttactatttttagcatttatatctctcaagtgcaaaaaacaggacactttatctg |
36871320 |
T |
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| Q |
108 |
acactattttgtacaaacaggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgtccatagcatc |
207 |
Q |
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| T |
36871319 |
acactattttgtacaaacaggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgtccatagcatc |
36871220 |
T |
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| Q |
208 |
attctacaaccctgggagtgatgctgtcatttaccctgctccagaattgttggaaaaacagacagaggaaaaacacaatgtgt |
290 |
Q |
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| T |
36871219 |
attctacaaccctgggagtgatgctgtcatttaccctgctccagaattgttggaaaaacagacagaggaaaaacacaatgtgt |
36871137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 37629765 - 37629884
Alignment:
| Q |
124 |
acaggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgtccatagcatcattctacaaccctggg |
223 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||||||||||| |
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| T |
37629765 |
acaggtaataacaaatggcaagtacaaaagtgtggaacaccgtgtggtagcacaaactgatggaacaagaatgtctatagcctcattctacaaccctggt |
37629864 |
T |
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| Q |
224 |
agtgatgctgtcatttaccc |
243 |
Q |
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| T |
37629865 |
agtgatgctgttatctaccc |
37629884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 8927603 - 8927715
Alignment:
| Q |
122 |
aaacaggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgtccatagcatcattctacaaccctg |
221 |
Q |
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|||||||| ||||||||||| ||||||||||||||| ||| | || || || |||||| |||| | |||||||||||||| ||||||||||| || | |
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| T |
8927603 |
aaacaggtgataacaaatgggaagtacaagagtgtgatgcacagagtaattgctcaaacagatggtgctagaatgtccatagcttcattctacaatccag |
8927702 |
T |
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| Q |
222 |
ggagtgatgctgt |
234 |
Q |
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||| ||||||||| |
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| T |
8927703 |
ggaatgatgctgt |
8927715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 55528393 - 55528466
Alignment:
| Q |
137 |
aatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgtccatagcatcatt |
210 |
Q |
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|||||||| |||||||||||| |||||||| || || |||||| |||| | ||||||||||||||| ||||| |
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| T |
55528393 |
aatggcaaatacaagagtgtgttgcaccgtgtaattgctcaaacagatgggaaaagaatgtccatagcttcatt |
55528466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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