View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15131_low_20 (Length: 269)
Name: NF15131_low_20
Description: NF15131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15131_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 42 - 184
Target Start/End: Original strand, 10034267 - 10034417
Alignment:
| Q |
42 |
aaattaaaatttatatacattattatttaaccaaatttcttgaagaaaaactcaaagttgcacaattcacataacctaagattgcaa--------acatg |
133 |
Q |
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| T |
10034267 |
aaattaaaatttatatacattattatttaaccaaatttcttgaagaaaaactcaaggttgcacaattcacataacctaagattgcaatcaattgcacatg |
10034366 |
T |
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| Q |
134 |
gaattaatgtacgtatgaaattcttgaaacataataacaaaataatgtatt |
184 |
Q |
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| T |
10034367 |
gaattaatgtacgtattaaattcttgaaacataataacaaaataatgtatt |
10034417 |
T |
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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 10034446 - 10034482
Alignment:
| Q |
214 |
ttaggatataaacctgggcatggttccatcaggttga |
250 |
Q |
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| T |
10034446 |
ttaggatataaacctgggcatggttccatcaggttga |
10034482 |
T |
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